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Detailed information on CNT3077678


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3045167Brassica junceaPrunus dulcis39.4868.5680.17242forward
CNT30125939Brassica junceaPhyscomitrium patens20.3937.4382.4125forward
CNT30303822Brassica junceaTriticum aestivum19.5822.0281.67120forward
CNT30540898Brassica junceaBrassica napus90.7100100556forward
CNT30238557Brassica junceaBrassica oleracea97.5591.0297.83598forward
CNT30173586Brassica junceaTrifolium pratense37.1923.8580.26228forward
CNT30145875Brassica junceaMedicago truncatula72.2726.8881.26443forward
CNT30441391Brassica junceaAegilops tauschii19.5822.8681.67120forward
CNT30264551Brassica junceaBrassica rapa74.0658.88100454forward
CNT30611624Brassica junceaArabis alpina74.3945.1992.98456forward
CNT30625265Brassica junceaDaucus carota58.0839.8782.58356forward
CNT30687021Brassica junceaTriticum urartu19.5824.5481.67120forward
CNT30359247Brassica junceaLactuca sativa60.8544.380.43373forward
CNT30422640Brassica junceaPapaver somniferum13.5420.2986.7583forward
CNT3027741Brassica junceaTheobroma cacao35.0749.279.53215forward
CNT3055927Brassica junceaAmborella trichopoda19.928.1881.15122forward
CNT30329767Brassica junceaDioscorea rotundata20.8820.9284.38128forward
CNT30150205Brassica junceaBrachypodium distachyon14.5221.1985.3989forward

Expression of CNT3077678

Sequence

>CNT3077678
CTAGAAGTTGTTCTTTTTGGCCATTGACATTTTCATATCTTACAAAGATATAATATGTTTACAAAGGGTGGTACAATACGAAGACTGTAGGATACAAGAG
AATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGTTTCAACTCCTTCATTGACTTCTCGTCTTTCCCAAACCCA
AGAGGGTTAAAGAAAGGTCCCCCGGGGTAAGACGGGTCACCCGAACCGGCAAAACCTTTCTCTAAGCCCAAGAAGTACTGTTTGCCCATTGATCCTGGGT
TGTACCAGTCCTGCAACCTCCGGTGCTCAGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTACGTCCCTGC
AGGTGGAATCACACCGGTTTGGAACCAAGGAAGGGCAGTGTCTGCTGGAATCAAACCAGCTTTGCCAAGAATCTCAGGGGCAATAGCTCCAGCTGCACCC
AACATAGCGAACCGTCCGTTGATGATCTCTCCGTAGGCTAACCATCTCGGTTCGATGAATCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGAGGGTCGA
ATCCATAGTCGCC