Detailed information on CNT30313529


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Camelina sativaChenopodium quinoa56.5718.6180.57211forward
CNT3045167Camelina sativaPrunus dulcis32.7134.5686.07122forward
CNT30303678Camelina sativaTriticum aestivum21.9812.3184.1582forward
CNT3060116Camelina sativaArabidopsis lyrata73.4657.3293.8274forward
CNT30687021Camelina sativaTriticum urartu21.9816.7784.1582forward
CNT3055927Camelina sativaAmborella trichopoda22.5219.484.5284forward
CNT30329767Camelina sativaDioscorea rotundata34.5821.0886.05129forward
CNT30150205Camelina sativaBrachypodium distachyon21.9819.5285.3782forward
CNT30725730Camelina sativaLupinus angustifolius63.2735.2280.93236forward

Expression of CNT30313529

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQSLLESDRPFLESQEQ*

Sequence

>CNT30313529
TGTTGACGGGATCCGCCAAGTGATCAAGCAGGTTCTGGTAAGGCCCCACTCCGGTCACTAGTCCTTGGATAAAGTAACCGAGGATAGCTAGCATAGCTAG
TCCACCGGGGTAAGATGGGTCACCTGAACCAGCCAAACCCTTCTCTAACCCCAAAAAGTACTGTTTCCCCATAGATCCTGGGTTGTACCAGTCCTGTAAC
CTCCGGTGCTCAGCAAAGCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAATTGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGG
TTTGGAACCAGGGAAGAGCAGTCTCTGCTGGAATCAGACCGGCCTTTCCTAGAATCTCAGGAGCAATAGCTCC