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Detailed information on CNT3060116


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 8e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Arabidopsis lyrataArabidopsis thaliana67.5752.6198.45323forward
CNT30281438Arabidopsis lyrataChenopodium quinoa31.1713.1481.88149forward
CNT3045167Arabidopsis lyrataPrunus dulcis26.5735.9881.89127forward
CNT30238557Arabidopsis lyrataBrassica oleracea67.5749.1690.09323forward
CNT30313529Arabidopsis lyrataCamelina sativa57.3273.4693.8274forward
CNT30611624Arabidopsis lyrataArabis alpina67.3631.9191.3322forward
CNT30217954Arabidopsis lyrataKalanchoe fedtschenkoi16.7422.2286.2580forward
CNT30359247Arabidopsis lyrataLactuca sativa66.953879.06320forward
CNT3055927Arabidopsis lyrataAmborella trichopoda20.522.6386.7398forward
CNT30329767Arabidopsis lyrataDioscorea rotundata42.6833.3380.88204forward
CNT30150205Arabidopsis lyrataBrachypodium distachyon18.4120.9585.2388forward
CNT30725730Arabidopsis lyrataLupinus angustifolius63.1845.0781.79302forward
CNT3040126Arabidopsis lyrataMarchantia polymorpha28.6620.6680.29137forward

Expression of CNT3060116

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RLAIDIVISYKTRICLHRVLQYEEANGSER*

>peptide 2 (39 aa)
VWPLTLSFLTKHEYVYTGCYNTKKPMVAKDRKICTIQET*

>peptide 3 (31 aa)
MSLLVESHRFGTKEEQSLVESDQPFLESQEQ*

Sequence

>CNT3060116
CGTTTGGCCATTGACATTGTCATTTCTTACAAAACACGAATATGTTTACACAGGGTGTTACAATACGAAGAAGCCAATGGTAGCGAAAGATAGAAAGATT
TGTACGATACAAGAGACATAAAACACATAGGATGATGATCACCTCAGTGGAACTTGAGGGTTGAAGAAAGGTCCACCGGGGTAAGCCGGGTTACCTGAAC
CGGCCAAACCCTTCTCTAACCCCAAGAAGTACTGTTTTCCCATAGATCCTGGGTTGTACCAGTCTTGTAACCTCCGGTGCTCAGCGAATCCCATCAGAGC
CATCTCGAGAACAAAGAGAGTGTAATTGTCTGCCCAGTAAGTGTATGTCCCTGCTGGTGGAATCACACCGGTTTGGAACCAAGGAAGAGCAGTCTCTGGT
GGAATCAGACCAGCCTTTCCTAGAATCTCAGGAGCAATAGCTCCAGCTGCACCCAACATGGCAAACCGTCCGTTGATG