Detailed information on CNT30624860


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-94

BLAST vs NONCODE:
NONBRAT004778, E-value = 2e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Daucus carotaManihot esculenta23.1731.680200forward
CNT30397679Daucus carotaTriticum turgidum8.5726.6285.1474forward
CNT30173588Daucus carotaTrifolium pratense23.8720.6282.52206forward
CNT30146039Daucus carotaMedicago truncatula71.6181.3281.23618forward
CNT30608086Daucus carotaGossypium raimondii9.9721.9987.2186forward
CNT30359023Daucus carotaLactuca sativa39.0563.9581.31337forward
CNT3055927Daucus carotaAmborella trichopoda14.1428.1881.97122forward
CNT3037927Daucus carotaCucumis melo27.3549.3780.08236forward

Expression of CNT30624860

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGLQGMLGLRIQLGLSLSPRNIVFPLILDCTSLVISCALQIP*

>peptide 2 (34 aa)
MVQKVLKWSNACDQSLDEVTQYCQHSKSPILNLL*

>peptide 3 (36 aa)
VVKMQLMFGCIINNSFSLTWLVCDDENPILRHNLLT*

>peptide 4 (65 aa)
MDFSSFPNPRGLKNGPPGYAGSPDPARPFSKPKKYCFPIDPGLYQSCNLLCSANPMRAISRTKSV*

Sequence

>CNT30624860
GTTGTGAAAATGCAGTTGATGTTTGGTTGCATTATAAACAACTCCTTTTCCCTTACATGGCTAGTTTGTGATGACGAAAACCCTATCTTAAGACATAACT
TACTGACATAGATTATTTAAATATTCTCAAATTCAAACTAAATAGACTTGTGGAAAATATGCCCGCGGTAGTTGGGCACACTTCCTAGTATGAGATAAAA
TTGACAAGGTGGTAAATTCACAATGTGGGTTTAAGTTCCAGAGTTCTAGTGGAACTTAAGGCTAGTCAAGACATTGTTGTTAACAGGATCAGCCAAATGG
TCCAGAAGGTTTTGAAGTGGTCCAACGCCTGTGACCAAAGCTTGGATGAAGTAACCCAATATTGCCAACATAGCAAGTCTCCCATTCTTAACCTCCTTTA
ACTTGAGCTCTTTCATGGATTTCTCGTCTTTTCCGAATCCAAGAGGATTAAAAAATGGGCCTCCAGGGTATGCTGGGTCTCCGGATCCAGCTAGGCCTTT
CTCTAAGCCCAAGAAATATTGTTTTCCCATTGATCCTGGATTGTACCAGTCTTGTAATCTCCTGTGCTCTGCAAATCCCATGAGAGCCATTTCTAGGACA
AAGAGTGTGTAGCCATCAGCCCAGTAGTTGTAAGTTCCTGCTGGAGGAATGACTCCTGTTTGGAACCATGGCAAGGCTGTTTCAGCTGGAATGAGCCCAA
TTTTCCCAAAATCTCAGGGGCTATAGCTCCTGCTGCACCCAACATGGCAAAACGACCATTGATTATCTCTCCGTAGGCTAGCCATTTGGGCTCGATGAAT
CCTCCGGTTCCTTCAGGGTCGGAAAGTCCCAAGGGGTCGAATCCAAAGTCACCTGGAAGGCTG