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Detailed information on CNT30556694


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-156

BLAST vs NONCODE:
NONSTUT001352, E-value = 9e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Panicum halliiOryza sativa61.9268.291.22592forward
CNT30671996Panicum halliiSetaria viridis46.1362.9197.28441forward
CNT30641326Panicum halliiNymphaea colorata53.8746.1188.16515forward
CNT30534636Panicum halliiEucalyptus grandis54.2947.1488.44519forward
CNT30186674Panicum halliiSecale cereale62.7664.2491600forward
CNT30298796Panicum halliiTriticum aestivum61.0961.3492.47584forward
CNT30393694Panicum halliiTriticum turgidum60.6759.9292.59580forward
CNT30554829Panicum halliiOryza glaberrima61.6149.2990.66589forward
CNT30443381Panicum halliiAegilops tauschii42.2641.7491.58404forward
CNT30251387Panicum halliiAvena sativa63.1858.1392.38604forward
CNT30664564Panicum halliiTriticum dicoccoides61.0961.892.64584forward
CNT30470687Panicum halliiSaccharum spontaneum61.9274.2893.07592forward
CNT30141287Panicum halliiLolium perenne54.7151.4389.48523forward
CNT3013856Panicum halliiZea mays55.9650.2896.64535forward
CNT30684601Panicum halliiTriticum urartu63.763.3792.61609forward
CNT30721831Panicum halliiTriticum spelta44.6750.4192.27427forward
CNT30345513Panicum halliiEragrostis tef62.0363.994.77593forward
CNT30363150Panicum halliiSorghum bicolor68.3154.0196.78653forward
CNT30596879Panicum halliiOryza meridionalis62.0354.691.4593forward
CNT30369301Panicum halliiOryza glumipatula53.9756.9592.44516forward
CNT30103289Panicum halliiOryza rufipogon55.6548.5890.23532forward
CNT30574765Panicum halliiOryza barthii61.9266.7491.05592forward
CNT30582834Panicum halliiEchinochloa crusgalli61.7261.5995.42590forward
CNT30497363Panicum halliiDigitaria exilis61.1949.790.6585forward
CNT30117513Panicum halliiOryza nivara62.0348.8590.39593forward
CNT30603457Panicum halliiOryza punctata51.1550.9992.23489forward

Expression of CNT30556694

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVMRPSPKEPTLMGVPAIAGEEIAMVEAAIA*

>peptide 2 (41 aa)
PLKSDKSMINHQGTKIQNHYYCTNIIFHLSVQRQLIISTCP*

>peptide 3 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 4 (66 aa)
MRQLAASMNPRTPPPEDNEVAERMELSCRGRSWWSARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30556694
CCCTTAAAATCTGACAAATCAATGATTAACCACCAGGGAACAAAAATACAAAATCACTACTATTGCACAAACATCATCTTTCATCTTAGTGTACAACGCC
AACTCATCATCTCGACCTGCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCGGCAGCTTGCAGCATCAATGAATCCACGTACGCCCCCTCCGGAA
GACAATGAAGTTGCAGAGCGGATGGAGCTTAGTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGA
AGGCCTCGGGGTCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCC
CTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCG
CTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCAAGCGCGCCGAGCA
TGGCCCAGCGGGAGTGGATGACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCGGGGTCAGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAA
CTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGC
TTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGGGGAGGAGATCGCCATGGTGGAGG
CGGCCATTGCGTGAGGCGAGGGAGAGTTGCTGAGACCGGTCGCTAGCTGCTTGCTG