« Back to Aegilops tauschii search


Detailed information on CNT30443381


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 2e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Aegilops tauschiiOryza sativa41.4346.291.27401forward
CNT30534338Aegilops tauschiiEucalyptus grandis55.1747.3885.77534forward
CNT30398595Aegilops tauschiiTriticum turgidum54.8690.4696.61531forward
CNT30555049Aegilops tauschiiOryza glaberrima50.4141.4388.52488forward
CNT30255226Aegilops tauschiiAvena sativa56.8261.890.18550forward
CNT30668524Aegilops tauschiiTriticum dicoccoides74.4880.297.09721forward
CNT30455809Aegilops tauschiiSaccharum spontaneum56.249.9589.71544forward
CNT30141287Aegilops tauschiiLolium perenne56.6153.8891.42548forward
CNT3011673Aegilops tauschiiZea mays47.2158.6689.28457forward
CNT30687584Aegilops tauschiiTriticum urartu48.2477.1996.57467forward
CNT30345522Aegilops tauschiiEragrostis tef55.4854.0890.5537forward
CNT30363150Aegilops tauschiiSorghum bicolor49.6939.7889.81481forward
CNT30596888Aegilops tauschiiOryza meridionalis44.0139.0889.44426forward
CNT30369277Aegilops tauschiiOryza glumipatula50.4150.0588.52488forward
CNT30149090Aegilops tauschiiBrachypodium distachyon5352.5687.13513forward
CNT30103422Aegilops tauschiiOryza rufipogon56.6142.2588.5548forward
CNT30575045Aegilops tauschiiOryza barthii56.6158.0589.78548forward
CNT30582453Aegilops tauschiiEchinochloa crusgalli43.639.8191.94422forward
CNT30497363Aegilops tauschiiDigitaria exilis56.6146.5688.87548forward
CNT30604592Aegilops tauschiiOryza punctata56.6154.9688.87548forward
CNT30556694Aegilops tauschiiPanicum hallii41.7442.2691.58404forward

Expression of CNT30443381

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MCLLAGHKVGGEGPRVVVDRVGEVVSEVLQRTLTSDDGLHKVSKHGEHCKAAVLDFLHLELSKRLRVVG*

>peptide 2 (43 aa)
MACTKYPNMENIARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 3 (53 aa)
MAQRQWITSSSRFLAKVSGSAESTRSGPYHGLLEAEALGAALRMVMRPPPPRA*

Sequence

>CNT30443381
TTTAGCAAACCCGAACAATTAATGTCCACTCGTATTCATATGGAAAATGAAAACCATGCATTTCTCATATAGACATTTCATGTTCCAGACGGGCCCTATT
TGTAAACATCTTTGATAGTGTACAACATCAACGATCAGATATTAATCATACATCCAGAGTACACATATACTCCTGAGAAGTCGATTTTCATGTGTTTACT
TGCCGGGCACAAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCAGCGAGGTTCTCCAGCGGACCCTTACCAGTGACGAT
GGCCTGCACAAAGTATCCAAACATGGAGAACATTGCAAGGCGGCCGTTCTTGATTTCCTTCACCTTGAGCTCAGCAAACGCCTCCGGGTCGTCGGCTAGG
CCAAGGGGGTCGAAGCTGCCACCGGGGTAGAGTGGGTCGACGATCTCCCCGAGCGGGCCACCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGA
CCTGGCAAGCCCAGATGGCAAGGATGCTTTGAGCGTGGACCAAGCTAGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCCGCCTT
GAACCAGACTGCCTCGCCGAACTTGACGCCGTTGCGAGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATTACC
TCGAGCTCGCGGTTCTTGGCGAAGGTCTCCGGGTCGGCGGAGAGCACGCGGTCGGGGCCGTACCACGGGCTGTTGGAGGCGGAGGCCTTGGGCGCGGCCT
TGCGCATGGTGATGCGGCCGCCGCCGCCGAGGGCGTAGGAGGCTCCGGCGAGCTTGATCGCGGGGGAGGAGAGCGCCATGGTGGTGGTGGCCGCCATTGC
TGCCGGATGGAACAGAGCAAGCTGCTGATGTGCGGCTGCCGCTGCTACTGATGGGTGGCTGCGTGAGG