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Detailed information on CNT30596879


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 4e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Oryza meridionalisOryza sativa64.7365.4698.86703forward
CNT30298862Oryza meridionalisTriticum aestivum48.5352.3991.08527forward
CNT30394891Oryza meridionalisTriticum turgidum46.6955.9691.52507forward
CNT30241578Oryza meridionalisAvena sativa54.756.389.56594forward
CNT30656613Oryza meridionalisTriticum dicoccoides60.5974.8692.4658forward
CNT3010578Oryza meridionalisZea mays43.2876.0594.04470forward
CNT30684601Oryza meridionalisTriticum urartu50.7457.3490.38551forward
CNT30345518Oryza meridionalisEragrostis tef51.7568.8792.53562forward
CNT30363150Oryza meridionalisSorghum bicolor53.9648.4790.96586forward
CNT30369301Oryza meridionalisOryza glumipatula47.757.1795.95518forward
CNT30103289Oryza meridionalisOryza rufipogon59.6759.1898.92648forward
CNT30497363Oryza meridionalisDigitaria exilis53.8749.790.94585forward
CNT30117553Oryza meridionalisOryza nivara64.9259.8598.72705forward
CNT30556694Oryza meridionalisPanicum hallii54.662.0391.4593forward

Expression of CNT30596879

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDALSCES*

>peptide 2 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 4 (30 aa)
VFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

Sequence

>CNT30596879
GTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAGAAT
AACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACACAAC
ACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCTCTC
ACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTT
GAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCG
ATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGA
GCCCCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAG
CGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAG
TCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCG
CCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGA
GAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTTGG