« Back to Setaria viridis search


Detailed information on CNT30671996


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 6e-90

BLAST vs NONCODE:
NONSTUT001352, E-value = 9e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298565Setaria viridisTriticum aestivum51.9342.0894.78364forward
CNT30393694Setaria viridisTriticum turgidum51.9337.694.78364forward
CNT30440655Setaria viridisAegilops tauschii51.7836.392.84363forward
CNT30251387Setaria viridisAvena sativa51.9335.0393.68364forward
CNT30664304Setaria viridisTriticum dicoccoides53.0752.9294.89372forward
CNT30455714Setaria viridisSaccharum spontaneum51.7840.2992.01363forward
CNT3013856Setaria viridisZea mays61.4840.5195.82431forward
CNT30129909Setaria viridisCorymbia citriodora43.5141.9591.48305forward
CNT30684772Setaria viridisTriticum urartu51.9340.5394.78364forward
CNT30721831Setaria viridisTriticum spelta53.0743.9294.62372forward
CNT30345513Setaria viridisEragrostis tef61.9146.7793.09434forward
CNT30362991Setaria viridisSorghum bicolor91.5881.5889.72642forward
CNT30369325Setaria viridisOryza glumipatula51.6435.7488.67362forward
CNT30150713Setaria viridisBrachypodium distachyon45.6554.7992.5320forward
CNT30581184Setaria viridisEchinochloa crusgalli49.3638.8397.4346forward
CNT30603457Setaria viridisOryza punctata51.6437.7590.88362forward
CNT30556694Setaria viridisPanicum hallii62.9146.1397.28441forward

Expression of CNT30671996

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSNSRFLAKVSGSADSPAVSQP*

>peptide 2 (30 aa)
MVMRPSPKEPTLMGVPAMVEEIAMVEAAIA*

>peptide 3 (47 aa)
MRQLACSINQSTYAPPGRKTMELQRRMASLVAGDEVGGRPGSRGRPR*

>peptide 4 (61 aa)
QNHYYCTNIILVYNADSSSRLAPEMQRETRHACGSSLAASTNPRTPLPAGRQWSCRGEWRA*

Sequence

>CNT30671996
ACAAAACCACTACTATTGCACAAACATCATCTTAGTGTACAACGCCGACTCATCATCTCGACTTGCCCCTGAAATGCAACGTGAAACAAGACACGCATGC
GGCAGCTCGCTTGCAGCATCAACCAATCCACGTACGCCCCTCCCGGCCGGAAGACAATGGAGTTGCAGAGGCGAATGGCGAGCTTAGTTGCCGGGGACGA
AGTTGGTGGTCGGCCAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGA
GCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCCAACTCGCGGTTCTTGGCGAAGGTCTCGGGGTCAGCGGA
CAGCCCAGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCAGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGG
CCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGC
CGGCCATGGTGGAGGAGATCGCCATGGTGGAGGCAGCCATTGCGTGAGGCGAGAGAGTGTGCTGGACCAGTCGGTAGCTGCTGCTGATGGGTGAAGGTGC
C