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Detailed information on CNT30363150


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 9e-164

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696247Sorghum bicolorOryza sativa56.4163.591.5682forward
CNT30641326Sorghum bicolorNymphaea colorata51.3655.687.92621forward
CNT30534453Sorghum bicolorEucalyptus grandis47.9751.5186.9580forward
CNT30188246Sorghum bicolorSecale cereale42.9349.0193.45519forward
CNT30298796Sorghum bicolorTriticum aestivum43.2654.9493.5523forward
CNT30393694Sorghum bicolorTriticum turgidum42.9353.6293.64519forward
CNT30555049Sorghum bicolorOryza glaberrima56.4157.8991.64682forward
CNT30443381Sorghum bicolorAegilops tauschii39.7849.6989.81481forward
CNT30241578Sorghum bicolorAvena sativa54.7662.7590.18662forward
CNT30656613Sorghum bicolorTriticum dicoccoides48.4766.6791.47586forward
CNT30141287Sorghum bicolorLolium perenne48.9758.2187.67592forward
CNT3013856Sorghum bicolorZea mays44.1750.1996.82534forward
CNT30684601Sorghum bicolorTriticum urartu45.3357.0293.07548forward
CNT30721831Sorghum bicolorTriticum spelta30.1142.9894.78364forward
CNT30345513Sorghum bicolorEragrostis tef48.9763.7993.75592forward
CNT30596879Sorghum bicolorOryza meridionalis48.4753.9690.96586forward
CNT30369277Sorghum bicolorOryza glumipatula48.396092.65585forward
CNT30103422Sorghum bicolorOryza rufipogon44.3341.3393.28536forward
CNT30575045Sorghum bicolorOryza barthii4456.3692.67532forward
CNT30582453Sorghum bicolorEchinochloa crusgalli50.1257.1793.89606forward
CNT30497363Sorghum bicolorDigitaria exilis54.6756.1690.02661forward
CNT30117570Sorghum bicolorOryza nivara56.4165.3391.35682forward
CNT30604592Sorghum bicolorOryza punctata46.956.8791.36567forward
CNT30556694Sorghum bicolorPanicum hallii54.0168.3196.78653forward
CNT3063784Sorghum bicolorSelaginella moellendorffii44.7547.1787.8541forward

Expression of CNT30363150

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

>peptide 2 (30 aa)
CVNLSIAFMCISFIFIDSFCLSKHLCLQNS*

>peptide 3 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

>peptide 4 (29 aa)
MAQREWITSSSRFLAKVSGSADSPAVSQP*

>peptide 5 (43 aa)
MAWTKKPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30363150
TGTGTGAATTTAAGCATTGCATTCATGTGTATATCTTTCATTTTCATCGATAGTTTCTGTTTATCCAAGCACTTATGCTTGCAAAATTCCTAGAGCTAGG
AAGTACTATAAAAACAGCAGAAAGCATCGCAGACGAACAAATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAAACAAAACCACAA
CTACTATTGCACAAGCATCGTTCGTCTTAGTGTACAACGCCAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAAGAGACACACATG
CAGCTAACTTGCAGCATCAATCAATCCACGTACGCCCTCTCCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTTAGTTGCCGGGGA
CGAAGTTGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCT
TGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGATCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCTCGCC
GAGCGGCCCGCCGGCAATGCGGTAGCCCTCGACGGCGCCCATGAGCACGACCTGGACGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGG
TTGCCCAGGTAGTCCAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGG
GGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGC
GGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGCCCGTACCAG
GGACTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATCG
CCGTGGAGGAGATCGACATGGTGGAGGCGGCCATTGATGAGCAAACTCTGCGAGCGTGAGAGTGTTGGACCGGTTGCTAGCTGCTGCTGCTGCTGCTGGT
GGTGGAGTG