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Detailed information on CNT30369301


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-122

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30656613Oryza glumipatulaTriticum dicoccoides57.1758.9391.12518forward
CNT30470687Oryza glumipatulaSaccharum spontaneum56.8464.6293.98515forward
CNT30345518Oryza glumipatulaEragrostis tef55.0861.1592.99499forward
CNT30596879Oryza glumipatulaOryza meridionalis57.1747.795.95518forward
CNT30582834Oryza glumipatulaEchinochloa crusgalli56.0753.0392.52508forward
CNT30556694Oryza glumipatulaPanicum hallii56.9553.9792.44516forward

Expression of CNT30369301

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRGHGSTAAAALTCRGRSWWSARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 2 (78 aa)
KQANFIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQIARMLCAWIKLGLPR*

Sequence

>CNT30369301
AAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCT
CTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACT
CTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGAC
GAAGTTGGTGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCC
GCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATCGCC
AGGATGCTCTGCGCGTGGATCAAGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGACCCCGCCTTGAACCACACCGCCTCGCCGA
ACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCAGCCCAGCGCGCCGAGCATCGCCCACCTGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGC
GAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCG
AGGTAGAGCACGCGGTCGGCGCCGGCCATGGTGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCTGCTGCTGCTGGGGTGTGTGTGC
GTGCTG