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Detailed information on CNT30251387


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 7e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Avena sativaSetaria viridis35.0351.9393.68364forward
CNT30186674Avena sativaSecale cereale57.4663.9293.13597forward
CNT30298862Avena sativaTriticum aestivum56.2158.0594.52584forward
CNT3013856Avena sativaZea mays52.1750.9491.33542forward
CNT30684601Avena sativaTriticum urartu56.7961.3994.75590forward
CNT30721831Avena sativaTriticum spelta41.150.4195.55427forward
CNT30345513Avena sativaEragrostis tef64.5872.3190.16671forward
CNT30596853Avena sativaOryza meridionalis52.2655.1391.16543forward
CNT30369293Avena sativaOryza glumipatula51.256.389.1532forward
CNT30150713Avena sativaBrachypodium distachyon35.7163.5396.23371forward
CNT30103505Avena sativaOryza rufipogon57.3672.3389.77596forward
CNT30556694Avena sativaPanicum hallii58.1363.1892.38604forward

Expression of CNT30251387

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (36 aa)
MVMRPSPKGEALEAFMGVPAIAGEESAMVEAAICSL*

Sequence

>CNT30251387
AGGTTGTTCGGTGAAAACTTAAACTGCTTGGACTTTCAGAAAGTTCAGAGATCTTAAGTAGTATTGACATTCAGAGAAACCAATAGTTAAGCAGAAGAAG
AAAGATTCCTTGATGAATAACCATAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTGGACTCGCCTTAACATGATCCATCAGTGACGACAC
ACATGCAGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCGAACTAAGCTCTTACTTGCCGGGG
ACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGT
CGACGATCTCACCGAGCGGGCCGCCGGCAACGCGGTATCCCTCGACGGCGCCCATGAGCACGACTTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTG
GACGAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGG
GCGAGCAGCTCGGGGAAGACGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGG
CGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTAGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTC
GGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGCCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCC
TTCATGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTTGCTCGCTCTGATCGAGGTGAGGTGTGCTTCGAGTGAGCTCGG
GTGGTAGGAGTTGCTGGTGTCTGTTGGTGCTGTGGAGTG