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Detailed information on CNT30603457


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Oryza punctataSetaria viridis37.7551.6490.88362forward
CNT30186674Oryza punctataSecale cereale50.9952.3691.41489forward
CNT30298862Oryza punctataTriticum aestivum50.9948.6193.66489forward
CNT30394891Oryza punctataTriticum turgidum50.9953.9793.66489forward
CNT30251846Oryza punctataAvena sativa50.9948.2292.64489forward
CNT30666046Oryza punctataTriticum dicoccoides50.9953.2193.46489forward
CNT30455714Oryza punctataSaccharum spontaneum50.8954.1691.8488forward
CNT3013856Oryza punctataZea mays59.1253.2990.3567forward
CNT30684601Oryza punctataTriticum urartu50.9950.8892.43489forward
CNT30345513Oryza punctataEragrostis tef50.9952.6992.02489forward
CNT30369293Oryza punctataOryza glumipatula58.0858.9493.9557forward
CNT30108136Oryza punctataOryza longistaminata36.2943.4595.4348forward
CNT30150713Oryza punctataBrachypodium distachyon37.5461.6491.94360forward
CNT30103289Oryza punctataOryza rufipogon51.344.9393.29492forward
CNT30574623Oryza punctataOryza barthii52.2449.893.81501forward
CNT30582453Oryza punctataEchinochloa crusgalli50.9946.1392.84489forward
CNT30556694Oryza punctataPanicum hallii50.9951.1592.23489forward

Expression of CNT30603457

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVMRPSPNTLAAALPARAGEERAMVAAAMSS*

>peptide 2 (60 aa)
MRGHGSTAAAAALTCRGRSWWSARFSRGPLPVTMAWTKNPNMENMASGSTTSPSGPPAMR*

>peptide 3 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 4 (64 aa)
SEPAQKYTLPVQISPFPLSNTRTSTRSTRIRTSIRYTFVHLLYRVHTRTLSLSLMQSRDASSSS*

>peptide 5 (62 aa)
RTCTEIHTTGTDLTIPPLEYSYIHAVHTNTYIYTVHVRTSTVPRTHTHTLSLSHAEQRRIVV*

>peptide 6 (65 aa)
QNLHRNTHYRYRSHHSPSRILVHPRGPHEYVHLYGTRSYIYCTAYTHAHSLSLSCRAETHRRLAS*

Sequence

>CNT30603457
TCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCATTCCCCCTCTCGAATACTCGTACATCCACGCGGTCCACACGAATACGTACATCTA
TACGGTACACGTTCGTACATCTACTGTACCGCGTACACACACGCACACTCTCTCTCTCTCTCATGCAGAGCAGAGACGCATCGTCGTCTAGCTAGCTAGC
TAAGCTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGGCGCTCACTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGTTCTCGAGGGG
GCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTAG
CCCTCGACGGCGCCCATGAGCACCACCTGGCACGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCACCCT
CGCTGAAGATCTGGGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAG
CATGGCCCACCTGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAACGTCTCCGGGTCAGCGGAGAGGCCGGCGGTGTCCCACCCGTAGTCGCCGGGG
AACTCGCCGGTGAGGTAGCTCGGTGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTGCCCGACGCGGACGGCTTGG
GCTTGGCAGCCGACTTGCGCATGGTGATGCGGCCCTCGCCGAACACCTTGGCGGCGGCCTTGCCGGCGAGAGCCGGGGAGGAGAGGGCCATGGTGGCGGC
GGCCATGTCTAGCTAGCTCTAGCTCGCTCTGCTGCTGCTGCTGCTGCTGGGTGTGTGCG