Detailed information on CNT30574765


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 3e-137

BLAST vs NONCODE:
NONBNAT007398, E-value = 7e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Oryza barthiiOryza sativa97.8610099.19868forward
CNT30656613Oryza barthiiTriticum dicoccoides72.4973.1590.67643forward
CNT30470687Oryza barthiiSaccharum spontaneum72.9481.1892.89647forward
CNT30684601Oryza barthiiTriticum urartu61.8957.1390.71549forward
CNT30345518Oryza barthiiEragrostis tef63.3668.8791.81562forward
CNT30596867Oryza barthiiOryza meridionalis71.1458.7594.77631forward
CNT30369334Oryza barthiiOryza glumipatula54.951.6498.97487forward
CNT30582834Oryza barthiiEchinochloa crusgalli72.8367.4391.33646forward
CNT30556694Oryza barthiiPanicum hallii66.7461.9291.05592forward

Expression of CNT30574765

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTWQPQIARMLCAWIRLGLPR*

>peptide 2 (42 aa)
IFGYAERGERRASHRSLHESNGPHRRCSPEIHTHLPGTKLVA*

>peptide 3 (49 aa)
KYSGTRKEENVARLTAACMKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

Sequence

>CNT30574765
AAATATTCGGGTACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACAC
TCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCG
AACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACC
CCTCGACGGCGCCCATGAGCACGACCTGGCAACCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCGAGCCCCCCCTC
GCTGAAGATCTGGGACCCCGCCTTGAACCACACGGCCTCGCCGAACTTCACGCCGTTGCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGC
ATNGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGA
ACTCGCCGGTGAGGTAGGACGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTT
GGGCTTGGCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCC
ATGGTGGACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAATGTGTGTCTTTTGAGCTCGTGA