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Detailed information on CNT30664564


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186674Triticum dicoccoidesSecale cereale75.2476.1296.62711forward
CNT30298796Triticum dicoccoidesTriticum aestivum94.9294.2299.67897forward
CNT3013856Triticum dicoccoidesZea mays49.5243.9894.02468forward
CNT30684601Triticum dicoccoidesTriticum urartu99.5897.9296.81941forward
CNT30150713Triticum dicoccoidesBrachypodium distachyon39.2663.5394.61371forward
CNT30556694Triticum dicoccoidesPanicum hallii61.861.0992.64584forward

Expression of CNT30664564

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (55 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGR

>peptide 3 (35 aa)
MQHLPVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30664564
AGAGAGACAAGTAGTTAACCAGAAGACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAA
CTCCTCATCTCGACTCGCCCTCACATGCAACATCTACCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGC
AGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGGGGTCGAAGCTG
CCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGG
CGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCC
GAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTG
GCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGC
CGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAA
GGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTT
GCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGT