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Detailed information on CNT30721831


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 3e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Triticum speltaSetaria viridis43.9253.0794.62372forward
CNT30186674Triticum speltaSecale cereale59.2753.7596.02502forward
CNT30300056Triticum speltaTriticum aestivum10098.696.22847forward
CNT30393694Triticum speltaTriticum turgidum58.9151.55100499forward
CNT30552254Triticum speltaOryza glaberrima43.3336.8191.55367forward
CNT30251387Triticum speltaAvena sativa50.4141.195.55427forward
CNT30664304Triticum speltaTriticum dicoccoides80.6497.1699.71683forward
CNT30472723Triticum speltaSaccharum spontaneum43.0935.9391.51365forward
CNT3013856Triticum speltaZea mays43.2134.494.26366forward
CNT30684689Triticum speltaTriticum urartu6668.0998.21559forward
CNT30345513Triticum speltaEragrostis tef43.2139.4492.08366forward
CNT30363150Triticum speltaSorghum bicolor42.9830.1194.78364forward
CNT30369334Triticum speltaOryza glumipatula42.9838.691.48364forward
CNT30150713Triticum speltaBrachypodium distachyon38.0255.1494.72322forward
CNT30582922Triticum speltaEchinochloa crusgalli43.0940.6994.52365forward
CNT30603531Triticum speltaOryza punctata41.5632.2993.18352forward
CNT30556694Triticum speltaPanicum hallii50.4144.6792.27427forward

Expression of CNT30721831

SRR9114152: 30.73 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (31 aa)
LFRQLQCLTLRGSERQVVNQKNRDALINLRK*

>peptide 3 (51 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGG

>peptide 4 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30721831
TTATTCAGACAACTTCAGTGTTTGACATTGAGAGGTTCAGAGAGACAAGTAGTTAACCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAG
ATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGA
ACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGG
GGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCA
GACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGC
TCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGC
CGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCG
GCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTG
CTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGC