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Detailed information on CNT30393694


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 6e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Triticum turgidumSetaria viridis37.651.9394.78364forward
CNT30186674Triticum turgidumSecale cereale69.4271.9596.73672forward
CNT30555055Triticum turgidumOryza glaberrima61.0554.8289.51591forward
CNT30251349Triticum turgidumAvena sativa66.4364.0494.25643forward
CNT30665140Triticum turgidumTriticum dicoccoides91.7493.9798.54888forward
CNT30472898Triticum turgidumSaccharum spontaneum60.4359.8891.11585forward
CNT3013856Triticum turgidumZea mays48.3543.9893.8468forward
CNT30684601Triticum turgidumTriticum urartu98.3599.0697.27952forward
CNT30721831Triticum turgidumTriticum spelta51.5558.91100499forward
CNT30363150Triticum turgidumSorghum bicolor53.6242.9393.64519forward
CNT30596901Triticum turgidumOryza meridionalis56.255.7990.81544forward
CNT30150713Triticum turgidumBrachypodium distachyon38.3363.5394.34371forward
CNT30103289Triticum turgidumOryza rufipogon61.0553.9789.51591forward
CNT30582755Triticum turgidumEchinochloa crusgalli53.5147.1894.02518forward
CNT30556694Triticum turgidumPanicum hallii59.9260.6792.59580forward

Expression of CNT30393694

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGRWCC

>peptide 2 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30393694
GTTAACCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCG
ACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAG
CCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGA
GGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTG
GCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAAC
CAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCA
GCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTC
GCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATG
CGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCG
TGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCGTTGGTGCTGT