Detailed information on CNT30103289


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696035Oryza rufipogonOryza sativa82.3788.4399.67902forward
CNT30641294Oryza rufipogonNymphaea colorata47.451.2386.71519forward
CNT30186790Oryza rufipogonSecale cereale41.7448.6291.25457forward
CNT30393694Oryza rufipogonTriticum turgidum53.9761.0589.51591forward
CNT30555055Oryza rufipogonOryza glaberrima89.599199.49981forward
CNT30251349Oryza rufipogonAvena sativa53.3358.1789.55584forward
CNT30665140Oryza rufipogonTriticum dicoccoides53.9762.5490.19591forward
CNT30472898Oryza rufipogonSaccharum spontaneum53.6160.0892.67587forward
CNT30684601Oryza rufipogonTriticum urartu48.9555.7889.74536forward
CNT30596879Oryza rufipogonOryza meridionalis59.1859.6798.92648forward
CNT30370980Oryza rufipogonOryza glumipatula6191.0199.25668forward
CNT30582453Oryza rufipogonEchinochloa crusgalli48.7750.3891.2534forward
CNT30117553Oryza rufipogonOryza nivara59.4555.2699.85651forward
CNT30603457Oryza rufipogonOryza punctata44.9351.393.29492forward
CNT30556694Oryza rufipogonPanicum hallii48.5855.6590.23532forward

Expression of CNT30103289

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVIFWDRGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (63 aa)
PIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 4 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

Sequence

>CNT30103289
CCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTATACTATACATAGCCAGAAA
TGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTA
GTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAA
CCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGG
GGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTC
GCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTC
GGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCT
CCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCC
CGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTAC
CACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCG
CGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAG