Detailed information on CNT3013856


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 8e-119

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Zea maysSetaria viridis40.5161.4895.82431forward
CNT30641322Zea maysNymphaea colorata38.4442.389.49409forward
CNT30186674Zea maysSecale cereale43.9850.1192.52468forward
CNT30298796Zea maysTriticum aestivum43.9849.1693.8468forward
CNT30393694Zea maysTriticum turgidum43.9848.3593.8468forward
CNT30251387Zea maysAvena sativa50.9452.1791.33542forward
CNT30664564Zea maysTriticum dicoccoides43.9849.5294.02468forward
CNT30684601Zea maysTriticum urartu43.9848.793.8468forward
CNT30721831Zea maysTriticum spelta34.443.2194.26366forward
CNT30345513Zea maysEragrostis tef50.8558.394.09541forward
CNT30363150Zea maysSorghum bicolor50.1944.1796.82534forward
CNT30150713Zea maysBrachypodium distachyon34.8763.5392.45371forward
CNT30497363Zea maysDigitaria exilis43.839.5990.77466forward
CNT30603457Zea maysOryza punctata53.2959.1290.3567forward
CNT30556694Zea maysPanicum hallii50.2855.9696.64535forward

Expression of CNT3013856

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MQCNVKQKTHMHLAASINPRTYTLSDPKDNEVA*

>peptide 2 (45 aa)
MWSARFSSGPLPVTMAWTKKPNMENMARRPPRAARRQCGSPRRHP*

>peptide 3 (46 aa)
MVMRPSPKEPTLMGVPAIAVEEIAMVEAAIAEAERESVGPVAIDAAG

>peptide 4 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT3013856
TACTTTCATTTTCATTGATATCTGCTGTTTATCCAAGCACATTTATGCTTGCCTTCTTAAGATAAAGAGCTAGAGAGAAAAAGGAGTATAGAAGAAAAAC
AAATTAATGGATATCAACAATTAACCAGCAGGAAACAAAAACCACCACTATTGCACAAACATGGTTCATCTTAGTGTACAACGCCAACTCATCATCTCGA
CTTGCCTATGCAATGCAACGTGAAACAAAAGACACACATGCATCTCGCAGCATCAATCAATCCACGTACGTACACCCTCTCCGATCCGAAAGACAATGAA
GTTGCATAGCATAGCCGTTGAGCTTAGTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACTGGGTCAGCGATGTGGTCAGCGAGGT
TCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAAAACATGGCGAGGCGGCCGCCTCGGGCGGCCCGCCGGCAATGCGG
TAGCCCTCGACGGCACCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCGAGGTAGTCCAGCCCGC
CCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGAGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCC
GAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAATGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCG
GGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGGCCGTACCAGGGGCTGCCGGACGCCGCCACCT
TGGGCTTGCCCACGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAACCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGAGATCGCCATGGT
GGAGGCAGCCATTGCTGAAGCTGAGCGTGAAAGTGTTGGACCGGTTGCTATAGATGCCGCTGGT