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Detailed information on CNT30298796


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664564Triticum aestivumTriticum dicoccoides94.2294.9299.67897forward
CNT3013856Triticum aestivumZea mays49.1643.9893.8468forward
CNT30684601Triticum aestivumTriticum urartu94.3393.4496.77898forward
CNT30363150Triticum aestivumSorghum bicolor54.9443.2693.5523forward
CNT30582755Triticum aestivumEchinochloa crusgalli54.8347.5493.87522forward
CNT30556694Triticum aestivumPanicum hallii61.3461.0992.47584forward

Expression of CNT30298796

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLA

>peptide 2 (36 aa)
RTFRKLFRQLQCLTLRGSERQVVNQKNRDALINLRK*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 4 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30298796
CTAGGACTTTCAGAAAATTATTCAGACAACTTCAGTGTTTGACATTGAGAGGTTCAGAGAGACAAGTAGTTAACCAGAAGAACAGAGATGCCTTGATTAA
TCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGCAACATCTATCAGTCCG
GACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCTAGAGCTTGAGCTGA
CGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCC
GGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAG
TCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGC
CGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCC
GTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAC
GCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCG
GGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGG