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Detailed information on CNT30582834


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 2e-151

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Echinochloa crusgalliOryza sativa67.4374.4291.8646forward
CNT30656613Echinochloa crusgalliTriticum dicoccoides68.3774.5290.84655forward
CNT30470687Echinochloa crusgalliSaccharum spontaneum75.6890.9794.62725forward
CNT30345518Echinochloa crusgalliEragrostis tef58.6668.8792.17562forward
CNT30596867Echinochloa crusgalliOryza meridionalis67.4360.1592.11646forward
CNT30369301Echinochloa crusgalliOryza glumipatula53.0356.0792.52508forward
CNT30574765Echinochloa crusgalliOryza barthii67.4372.8391.33646forward
CNT30117513Echinochloa crusgalliOryza nivara67.6453.3891.2648forward
CNT30556694Echinochloa crusgalliPanicum hallii61.5961.7295.42590forward

Expression of CNT30582834

Peptides detected in this lncRNA

>peptide 1 (31 aa)
VERKEKKTSWVGRDTIQSDNEHCKSFSVEPS*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (49 aa)
MVTRASPKRDDGTLTALPANAVEERAMVLVAIALQTPRCLVLYAGVSETR

>peptide 4 (37 aa)
MVQTETSARSHPNTLQHVSTSNSLGSTPHLPGTKLVA*

>peptide 5 (38 aa)
WKGKKKRRAGLDGIQYNQTMNTANPSPLNPRNLHHGTN*

Sequence

>CNT30582834
GTGGAAAGGAAAGAAAAAAAGACGAGCTGGGTTGGACGGGATACAATACAATCAGACAATGAACACTGCAAATCCTTCTCCGTTGAACCCTCGTAATTTA
CACCATGGTACAAACTGAAACCAGTGCGCGCTCACATCCGAACACCCTACAGCACGTCAGCACATCGAACAGTTTGGGATCAACGCCTCACTTGCCGGGC
ACGAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGAGCTCCTTGACCTTGAGCTCAGCGAAGGCCTCTGGGT
CGTCGGCCAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCAATGCGGTAGCCCTCGACGGCGCC
CATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCAAGGCCGCCCTCGCTGAAGATCTGG
GAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGG
AGTGGATGACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAG
GTAGCTCGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCTGGGCCGTACCACGGGCTGCCGGAGGCGGCCGGCTTGGGCTTCGCCGCGGTC
TTGCGCATGGTCACGCGGGCCTCGCCGAAGAGAGACGATGGCACGTTGACGGCCTTGCCGGCGAACGCCGTGGAGGAGAGGGCCATGGTGCTGGTCGCCA
TTGCGCTGCAAACACCGAGGTGTCTTGTGCTCTATGCAGGGGTGAGTGAGACTCGCAG