CANTATAdb - search

Detailed information on CNT30497363

BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT002216, E-value = 1e-67

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696263	Digitaria exilis	Oryza sativa	61.68	66.54	87.74	726	forward
CNT30521860	Digitaria exilis	Setaria italica	50.72	53.26	86.1	597	forward
CNT30641326	Digitaria exilis	Nymphaea colorata	51.32	54.07	85.93	604	forward
CNT30534453	Digitaria exilis	Eucalyptus grandis	53.61	56.04	87.48	631	forward
CNT30188246	Digitaria exilis	Secale cereale	41.72	46.36	90.22	491	forward
CNT30298862	Digitaria exilis	Triticum aestivum	44.27	51.79	90.4	521	forward
CNT30225735	Digitaria exilis	Hordeum vulgare	56.16	82.32	85.63	661	forward
CNT30394891	Digitaria exilis	Triticum turgidum	41.21	53.53	91.34	485	forward
CNT30555049	Digitaria exilis	Oryza glaberrima	56.41	56.37	89.61	664	forward
CNT30443381	Digitaria exilis	Aegilops tauschii	46.56	56.61	88.87	548	forward
CNT30241578	Digitaria exilis	Avena sativa	61.09	68.15	88.04	719	forward
CNT30656613	Digitaria exilis	Triticum dicoccoides	48.34	64.73	90.51	569	forward
CNT30455714	Digitaria exilis	Saccharum spontaneum	52.34	68.37	90.58	616	forward
CNT30141287	Digitaria exilis	Lolium perenne	56.24	65.09	87.01	662	forward
CNT3013856	Digitaria exilis	Zea mays	39.59	43.8	90.77	466	forward
CNT30684601	Digitaria exilis	Triticum urartu	46.39	56.82	89.93	546	forward
CNT30345522	Digitaria exilis	Eragrostis tef	45.88	54.38	91.3	540	forward
CNT30363150	Digitaria exilis	Sorghum bicolor	56.16	54.67	90.02	661	forward
CNT30596879	Digitaria exilis	Oryza meridionalis	49.7	53.87	90.94	585	forward
CNT30369277	Digitaria exilis	Oryza glumipatula	49.87	60.21	89.95	587	forward
CNT30108136	Digitaria exilis	Oryza longistaminata	29.31	43.07	92.75	345	forward
CNT30103422	Digitaria exilis	Oryza rufipogon	50.81	46.11	90.8	598	forward
CNT30575045	Digitaria exilis	Oryza barthii	50.72	63.24	91.12	597	forward
CNT30582453	Digitaria exilis	Echinochloa crusgalli	50.89	56.51	90.32	599	forward
CNT30117570	Digitaria exilis	Oryza nivara	56.41	63.6	89.31	664	forward
CNT30604592	Digitaria exilis	Oryza punctata	53.53	63.19	91.43	630	forward
CNT30556694	Digitaria exilis	Panicum hallii	49.7	61.19	90.6	585	forward

Expression of CNT30497363

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MACTKNPNMENMARRPFLISFTLSSANASGSSARPSGSKLPPGYNGSTTSPSGPPAMR*

>peptide 2 (29 aa)
MAHRQWITSSSRFLAKVSGSAESPAVSQP*

>peptide 3 (52 aa)
MVMRPSPNTSLVVVVAGLPTSARDVRAMVAAAMSIRSDHSSFRCDALLCVCV*

Sequence

>CNT30497363
TAGTGTGCAATATGCAGAAAGATATATATTAACAACGAGGTGCATATTCCATTATTGATCAATCTGGTCCAGATCGTGCGTACAGATACACTATTGGTAC
ATCAACCTGCGATCCCAGGCTCCCTTCACAAATACTCATACATCCTTCATCCACATACGAACACGTACGTCTACGACAGTAGTACACGTACGCGACCCCG
CCGGTCGCTTGGCTTCACTTCACTTCACACCTAGCAACATCCACCCATACCCAGCATCACTCACTTGCCGGGGACGAAGTTGGTGGCGTAAGCCCAGGCG
TTGTTGTTGACGGGGTCAGCGAGGTGGTCAGCGAGGTTCTCCAACGGGCCCTTTCCTGTAACAATGGCCTGCACGAAGAATCCAAACATGGAGAACATGG
CGAGGCGGCCATTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCCGGGTCGTCGGCGAGGCCCAGTGGGTCAAAGCTCCCACCAGGGTACAATGG
GTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTAGCCCTCGACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATTGCCAAGATGCTCTGGGCA
TGGATCAGGCTCGGGTTGCCAAGGTAATCCAGCCCACCCTCGCTGAAGATCTGTGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCC
GGGCGAGGAGCTCCGGGAAGACGCAGCCGAGTGCGCCGAGCATGGCCCACCGGCAGTGGATCACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCCGGGTC
GGCCGAGAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAGTGGGCCGAGGTAGAGGACGCGA
TCGGGGCCGTACCATGGGCTGCCGGACGCCGCGGGCTTGGGCTTGGCCGAGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAACACGTCCCTGGTGGTGG
TGGTCGCCGGCTTGCCGACGAGCGCGCGGGATGTGAGAGCCATGGTGGCGGCGGCCATGTCGATCAGATCAGATCACTCCTCCTTTCGCTGCGATGCTCT
GCTCTGTGTTTGTGTGTGATGGTTGAGTAAGAGCACGGGCAGGTGCTTTTTTTATACTGGTGGAAAGGATAGAAGGG