CANTATAdb - search

Detailed information on CNT30554829

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 5e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696263	Oryza glaberrima	Oryza sativa	82.76	90.65	97.57	989	forward
CNT30522165	Oryza glaberrima	Setaria italica	47.45	61.83	85.36	567	forward
CNT30285424	Oryza glaberrima	Triticum aestivum	47.95	80.48	90.05	573	forward
CNT30656613	Oryza glaberrima	Triticum dicoccoides	49.71	67.58	91.75	594	forward
CNT30470687	Oryza glaberrima	Saccharum spontaneum	49.21	73.78	92.52	588	forward
CNT30345520	Oryza glaberrima	Eragrostis tef	50.71	70.38	93.07	606	forward
CNT30596888	Oryza glaberrima	Oryza meridionalis	56.15	61.56	98.96	671	forward
CNT30582453	Oryza glaberrima	Echinochloa crusgalli	59	66.51	88.94	705	forward
CNT30556694	Oryza glaberrima	Panicum hallii	49.29	61.61	90.66	589	forward

Expression of CNT30554829

Peptides detected in this lncRNA

>peptide 1 (44 aa)
YCIRKFKVLINPSMPQYKQFNYIFTLYIARNGYILGSREYLFLI*

>peptide 2 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 3 (35 aa)
MENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

Sequence

>CNT30554829
CTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAACTACATATTTACACTATACATAGCCAGAAATGGTTAT
ATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGA
AACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCT
TCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGGACGAA
GTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGCCGAACATGGAGAACATGGCG
AGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGT
CGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTG
GATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGG
GCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGG
CGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTC
GGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGC
GCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGGAGTTGGAGATGGCGC