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Detailed information on CNT30117513


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 6e-135

BLAST vs NONCODE:
NONBNAT005173, E-value = 6e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695953Oryza nivaraOryza sativa63.0188.4499.74765forward
CNT30656613Oryza nivaraTriticum dicoccoides54.4575.290.02661forward
CNT30470687Oryza nivaraSaccharum spontaneum53.2981.1892.58647forward
CNT30345518Oryza nivaraEragrostis tef46.2168.7590.37561forward
CNT30370984Oryza nivaraOryza glumipatula65.1699.6298.99791forward
CNT30103295Oryza nivaraOryza rufipogon79.8279.6999.59969forward
CNT30577620Oryza nivaraOryza barthii43.3310098.48526forward
CNT30582834Oryza nivaraEchinochloa crusgalli53.3867.6491.2648forward
CNT30556694Oryza nivaraPanicum hallii48.8562.0390.39593forward

Expression of CNT30117513

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 2 (87 aa)
FFLRPNALDFNPLNQRIHYLPRFDPIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIKITPRIST*

Sequence

>CNT30117513
TTTTTTTTAAGACCAAACGCTTTGGATTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGACCCAATCTATTGTATACGTAAATTTAAAG
TACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTTTGGGATTGAGGGAGTATT
TGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAAAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCA
AAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAA
CTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCG
TTGTTGTTGACGGGGTCGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGG
CGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGAT
GGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCG
CCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAACCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCT
TGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGG
GCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCG
CCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGG
GAGTTGGAGATGGC