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Detailed information on CNT30684601


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-136

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690606Triticum urartuOryza sativa57.1363.2591.26549forward
CNT30186674Triticum urartuSecale cereale69.4171.4196.55667forward
CNT30298796Triticum urartuTriticum aestivum93.4494.3396.77898forward
CNT30393694Triticum urartuTriticum turgidum99.0698.3597.27952forward
CNT30552254Triticum urartuOryza glaberrima54.9452.9691.29528forward
CNT30441148Triticum urartuAegilops tauschii61.9165.8293.95595forward
CNT30251387Triticum urartuAvena sativa61.3956.7994.75590forward
CNT30664564Triticum urartuTriticum dicoccoides97.9299.5896.81941forward
CNT30470687Triticum urartuSaccharum spontaneum57.1368.8891.62549forward
CNT3013856Triticum urartuZea mays48.743.9893.8468forward
CNT30345513Triticum urartuEragrostis tef54.7356.6892.59526forward
CNT30363150Triticum urartuSorghum bicolor57.0245.3393.07548forward
CNT30596879Triticum urartuOryza meridionalis57.3450.7490.38551forward
CNT30369293Triticum urartuOryza glumipatula54.8455.7789.94527forward
CNT30150713Triticum urartuBrachypodium distachyon38.6163.5394.34371forward
CNT30103289Triticum urartuOryza rufipogon55.7848.9589.74536forward
CNT30574765Triticum urartuOryza barthii57.1361.8990.71549forward
CNT30582755Triticum urartuEchinochloa crusgalli56.8249.7393.77546forward
CNT30497363Triticum urartuDigitaria exilis56.8246.3989.93546forward
CNT30117559Triticum urartuOryza nivara57.6552.0789.53554forward
CNT30603457Triticum urartuOryza punctata50.8850.9992.43489forward
CNT30556694Triticum urartuPanicum hallii63.3763.792.61609forward

Expression of CNT30684601

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRQWMTSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFCFG*

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30684601
GAAGAACAGAGATGCCTTGATTGATCTGAAAAATAACCAGATACATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCC
CTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAA
GTTGTCGGCCTAGAGCTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCT
GCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATG
GCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGC
CGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTCCCGGTTCTT
GGCGAAGGTCTCGGGGTCGGCGGACAGCCCCGCGGTGTCCCAGCCGTAGTCACCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGG
CCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGA
AGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTT
TTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGCTGGTGGTCCTCTACTTTTGCTTCG