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Detailed information on CNT30345513


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-140

BLAST vs NONCODE:
NONSTUT001352, E-value = 9e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696035Eragrostis tefOryza sativa64.4458.6389.8598forward
CNT30671996Eragrostis tefSetaria viridis46.7761.9193.09434forward
CNT30641322Eragrostis tefNymphaea colorata57.9755.6486.8538forward
CNT30186674Eragrostis tefSecale cereale56.365692.16523forward
CNT30298862Eragrostis tefTriticum aestivum56.3651.9993.31523forward
CNT30394891Eragrostis tefTriticum turgidum54.9656.2993.33510forward
CNT30552150Eragrostis tefOryza glaberrima49.8954.4194.38463forward
CNT30440655Eragrostis tefAegilops tauschii39.6636.891.85368forward
CNT30251387Eragrostis tefAvena sativa72.3164.5890.16671forward
CNT30665140Eragrostis tefTriticum dicoccoides64.4463.2890.64598forward
CNT30472898Eragrostis tefSaccharum spontaneum64.3361.1191.62597forward
CNT3013856Eragrostis tefZea mays58.350.8594.09541forward
CNT30684601Eragrostis tefTriticum urartu56.6854.7392.59526forward
CNT30721831Eragrostis tefTriticum spelta39.4443.2192.08366forward
CNT30363150Eragrostis tefSorghum bicolor63.7948.9793.75592forward
CNT30596853Eragrostis tefOryza meridionalis59.9156.4591.55556forward
CNT30369293Eragrostis tefOryza glumipatula57.3356.390.41532forward
CNT30149365Eragrostis tefBrachypodium distachyon54.5379.9487.75506forward
CNT30103505Eragrostis tefOryza rufipogon64.4472.5791.14598forward
CNT30574623Eragrostis tefOryza barthii56.7952.3990.89527forward
CNT30582755Eragrostis tefEchinochloa crusgalli56.2547.5493.3522forward
CNT30603457Eragrostis tefOryza punctata52.6950.9992.02489forward
CNT30556694Eragrostis tefPanicum hallii63.962.0394.77593forward

Expression of CNT30345513

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHRQWITSSSRFLAKVSGSAERPAVSHP*

>peptide 2 (35 aa)
MVMRASPKAPTLMGVPAIAGEEIAAMVEAAIADRA*

>peptide 3 (63 aa)
MSTNTHYWYNLPSACSILQYSYTHRYNSTYEYVRRLRYTRHPSFTLLLTCRGRSWWRRTMRCC*

Sequence

>CNT30345513
TTATTTAATTTATTGAGTCATTCATCAGGCCCATCCAGAACATGAGCACAAATACACACTACTGGTACAATCTCCCATCGGCGTGCTCCATTTTACAGTA
CTCGTACACCCACAGGTACAATAGTACATACGAATACGTACGTCGACTACGGTACACACGACATCCCAGCTTCACCTTGCTGCTCACTTGCCGGGGACGA
AGTTGGTGGCGTAGGACCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGCCCAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGAC
GACCTCGCCGAGCGGGCCGCCGGCGACGCGGTATCCCTCGACGGCGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATC
AGGCTCGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCCA
GCAGCTCGGGGAAGACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGA
GAGGCCGGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCCAGGTACTTGACGCGGTCGGGG
CCGTACCACGGGCTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGGCCTCGCCGAAGGCGCCCACCTTGATGGGGGTGC
CGGCCATCGCCGGGGAGGAGATCGCAGCCATGGTGGAGGCAGCCATTGCTGATCGAGCGTGAGCTGATGAGAGAGTGTGCTAGCTAGCTGTGCGATGAGT
GTGCCGGAGCGGGCGACGCGGGCTAAAT