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Detailed information on CNT30543419


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 4e-143

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526207Brassica napusPhaseolus vulgaris50.2839.0179.73449forward
CNT30631224Brassica napusVigna unguiculata50.2855.0980.18449forward
CNT30486017Brassica napusOlea europaea54.248.9477.89484forward
CNT30711417Brassica napusGlycine max64.9532.479.83580forward
CNT3085597Brassica napusVigna radiata50.2832.5481.96449forward
CNT30611624Brassica napusArabis alpina89.779.3990.51801forward
CNT30725700Brassica napusLupinus angustifolius56.2256.0981.27502forward

Expression of CNT30543419

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

>peptide 2 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 3 (36 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGLKNGPPG*

>peptide 4 (50 aa)
MKPPVPSGSERPSGSNPKSPGGVDAALTTKETFLCDTDTAGFAPNICLAV*

Sequence

>CNT30543419
AAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGT
TGACGGGATCCGCCAAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCT
ACCGTTCTTGACCTCCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAATGGTCCACCGGGGTAAGCCGGGTCA
CCTGAACCCGCGAAACCTTTCTCTAGACCCAAGAAGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCA
TCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGT
GTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCAAACCTCCCGTTGATGATCTCTCCGTAGGCT
AGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCGAAGTCGCCAGGTGGAGTTGATGCAGCCTTAACAA
CCAAGGAAACCTTCCTCTGTGATACGGACACAGCTGGTTTTGCGCCGAATATCTGTCTAGCGGTCTGAACAGAGGAGGTAAGTGAAGAAGATACAAGCGC
TTGTGCTGCCATTTTTTTTTGCTTAAACTCTTCTCTTCTGTCACCAAGAGACGATGATTATTGAATAATGGTCTGCAGGGAACCTAGTGTTAA