Detailed information on CNT3045175


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281438Prunus dulcisChenopodium quinoa44.3217.983.74203forward
CNT30405505Prunus dulcisBeta vulgaris30.5737.9482.86140forward
CNT30526207Prunus dulcisPhaseolus vulgaris27.9511.1289.06128forward
CNT30631224Prunus dulcisVigna unguiculata37.3420.9883.04171forward
CNT30486017Prunus dulcisOlea europaea44.9820.8383.98206forward
CNT30711417Prunus dulcisGlycine max27.957.1587.5128forward
CNT30125939Prunus dulcisPhyscomitrium patens18.3425.1583.3384forward
CNT3085597Prunus dulcisVigna radiata36.6812.1782.14168forward
CNT30540897Prunus dulcisBrassica napus41.723.0780.63191forward
CNT30238548Prunus dulcisBrassica oleracea41.722.6680.63191forward
CNT30173588Prunus dulcisTrifolium pratense23.1410.6183.96106forward
CNT30145875Prunus dulcisMedicago truncatula22.056.1386.14101forward
CNT30264123Prunus dulcisBrassica rapa41.720.9480.63191forward
CNT30140296Prunus dulcisLolium perenne24.0211.3483.64110forward
CNT30608086Prunus dulcisGossypium raimondii19.6523.0288.8990forward
CNT30718929Prunus dulcisMalus domestica golden40.3919.9485.95185forward
CNT30621314Prunus dulcisCajanus cajan21.47.7789.898forward
CNT30359331Prunus dulcisLactuca sativa28.8215.3181.06132forward
CNT30422640Prunus dulcisPapaver somniferum27.7331.0584.25127forward
CNT30118654Prunus dulcisCitrus clementina42.3636.0682.47194forward
CNT3037927Prunus dulcisCucumis melo29.0427.8285.71133forward
CNT30329767Prunus dulcisDioscorea rotundata59.3944.4479.04272forward
CNT30150205Prunus dulcisBrachypodium distachyon24.0226.1984.55110forward
CNT30725047Prunus dulcisLupinus angustifolius32.118.485.71147forward

Expression of CNT3045175

Peptides detected in this lncRNA

>peptide 1 (33 aa)
ASIRVLNSSFNMSFLTESHRQIITTNCSHIILQ*

Sequence

>CNT3045175
GCATCAATTAGGGTTCTAAATAGCTCTTTTAACATGTCATTTCTTACAGAGAGTCACAGACAGATAATAACAACAAATTGTTCTCACATAATCTTACAAT
GAGATAGGAAGAAGAGAGAGGAGAGAGAGACCCAAAGGGTCATCATATTCCAAGCAAAGCAACCAAGATATATTGTACAAATCTCTGTCAATGGAACTTG
AGGCTGGTCAAGACGTTGTTGTTCACAGGGTCAGCCAAATGATCCAGAAGTAACCCAAAATTGCCAACATAGCCAGCCTCCCATTCTTCACCTCCTTGAG
CTTCAAGTCCTTCAAAGACTTCTCATCTTTGCCAAATCCCAGAGGGTTGAAGAGGGGCCCACCCGGGTAAGCTGGGTCCCCTGAGCCACCCAAGTACTTC
TCCAAGCCCAAAAAGTACTGCTTGCCCATGGACCCTGGATTGTACCAGTCCTGTAACC