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Detailed information on CNT30346584


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM5|PIP26_MAIZE, E-value = 2e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Eragrostis tefOryza sativa42.0944.1387.28338forward
CNT30671184Eragrostis tefSetaria viridis15.4422.0692.74124forward
CNT30520361Eragrostis tefSetaria italica36.2412.1384.19291forward
CNT30535437Eragrostis tefEucalyptus grandis17.8140.0681.12143forward
CNT30375565Eragrostis tefArabidopsis thaliana8.3427.1388.0667forward
CNT30180948Eragrostis tefSecale cereale22.178.6888.2178forward
CNT30289867Eragrostis tefTriticum aestivum18.3131.9687.76147forward
CNT30221191Eragrostis tefHordeum vulgare12.246.2389.898forward
CNT30387873Eragrostis tefTriticum turgidum22.5435.6386.19181forward
CNT30568278Eragrostis tefActinidia chinensis13.3321.785.05107forward
CNT30586754Eragrostis tefMusa acuminata13.0838.8985.71105forward
CNT30552571Eragrostis tefOryza glaberrima30.7697.6384.62247forward
CNT30437070Eragrostis tefAegilops tauschii18.3129.7687.76147forward
CNT30254684Eragrostis tefAvena sativa25.6591.5686.89206forward
CNT30657898Eragrostis tefTriticum dicoccoides41.7245.8379.4335forward
CNT3012516Eragrostis tefZea mays22.1712.8288.2178forward
CNT30228928Eragrostis tefAnanas comosus10.9622.5684.0988forward
CNT30214941Eragrostis tefHelianthus annuus6.8521.5789.0955forward
CNT30681057Eragrostis tefTriticum urartu42.4733.4685.04341forward
CNT30362596Eragrostis tefSorghum bicolor14.9420.389.17120forward
CNT30595794Eragrostis tefOryza meridionalis6.7224.6690.7454forward
CNT30148622Eragrostis tefBrachypodium distachyon22.1772.9586.52178forward
CNT30102464Eragrostis tefOryza rufipogon26.158.2686.19210forward
CNT30575194Eragrostis tefOryza barthii8.4733.1786.7668forward
CNT30116009Eragrostis tefOryza nivara25.925.5585.1208forward
CNT30604398Eragrostis tefOryza punctata42.4714.4285.63341forward
CNT30112022Eragrostis tefFicus carica8.2223.489.3966forward

Expression of CNT30346584

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLALTSERGMLVECFACALVLGRGHHGVYL*

>peptide 2 (33 aa)
MKIMPPNAHAMPRTPTPPHAASGPEADASVWCL*

>peptide 3 (41 aa)
MAPRLCATMYSSARTSETFLARNSPNVTAGLMWPPEMPAVQ*

>peptide 4 (35 aa)
DLNLQLISLPGRVSRARYAWDQWRRRRCRRARTSQ*

Sequence

>CNT30346584
GACCTTAATCTCCAATTAATTTCCTTACCGGGACGTGTGAGTCGCGCGCGTTACGCTTGGGATCAGTGGCGGAGAAGACGGTGTAGACGAGCACGAACGT
CCCAATGATCTCGGCGGCGAGCCCCGTGCCGGTGGAGTACCCGGCGCTCACCTCGTTGGCGCCGCCGCCGTACCGGTTGTAGAAGCCGCTCTGGAAGCCC
TTGACGAGCGCGACGCCGCAGATGGCGCCCAGGCTCTGCGCGACCATGTACAGCAGCGCGCGCACCAGCGAAACCTTCCTCGCCAGGAACAGCCCGAACG
TGACGGCAGGGTTGATGTGGCCTCCGGAGATGCCCGCGGTGCAGTAGACGAGGATGAAGATCATGCCGCCGAACGCCCACGCGATGCCGAGGACGCCCAC
GCCGCCGCACGCCGCGTCGGGGCCCGAGGCCGACGCGTCGGTCTGGTGCTTGTAGCCGATGACCGTGGCCACGGTGATGTAGAGGAAGAGCAGCGTGGCG
ACGAACTCGGCGATCACGGCGCGGTACAGGGACCACTTGCCGAGCTCCTCGATGTCGACGAGGGGAGCCGGAGGCGGGTCCGCGTAGTCGCGGGGGACGC
CGCCGGCCTCCAGGGTGGACACGTCGACCTCCTTGCCCATTATGGGAGCTGTTGCTGGATGCTGGCGCTGACCAGTGAGCGAGGAATGCTTGTTGAGTGC
TTTGCTTGTGCTCTGGTTTTGGGGCGCGGTCACCATGGGGTGTATTTATAGAGGCTTAAGCCCTTATGAAGGAGGCTTCAACTGAGGTTTAAGCTGGTAT
GGT