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Detailed information on CNT30535437


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM4|PIP27_MAIZE, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520589Eucalyptus grandisSetaria italica43.986.8181.53157forward
CNT30547793Eucalyptus grandisIpomoea triloba27.4522.3786.7398forward
CNT30698271Eucalyptus grandisQuercus lobata42.5848.2580.92152forward
CNT3070604Eucalyptus grandisQuercus suber42.5835.4380.92152forward
CNT30629601Eucalyptus grandisVigna unguiculata30.5324.1783.49109forward
CNT30159576Eucalyptus grandisPistacia vera27.1712.2584.5497forward
CNT30180948Eucalyptus grandisSecale cereale45.94881.71164forward
CNT30289867Eucalyptus grandisTriticum aestivum41.1831.9683.67147forward
CNT30221631Eucalyptus grandisHordeum vulgare31.658.1185.84113forward
CNT30387873Eucalyptus grandisTriticum turgidum41.1828.9484.35147forward
CNT30568278Eucalyptus grandisActinidia chinensis27.4519.8887.7698forward
CNT30592144Eucalyptus grandisMusa acuminata18.4928.789.3966forward
CNT3084810Eucalyptus grandisVigna radiata33.8936.0180.99121forward
CNT30437070Eucalyptus grandisAegilops tauschii41.1829.7685.03147forward
CNT30139319Eucalyptus grandisLolium perenne35.0110.6881.6125forward
CNT30227632Eucalyptus grandisAnanas comosus28.5715.1383.33102forward
CNT30646760Eucalyptus grandisRosa chinensis41.1835.0882.31147forward
CNT30129030Eucalyptus grandisCorymbia citriodora22.6913.7393.8381forward
CNT30681057Eucalyptus grandisTriticum urartu41.1814.4383.67147forward
CNT30346584Eucalyptus grandisEragrostis tef40.0617.8181.12143forward
CNT30355349Eucalyptus grandisLactuca sativa29.9717.8383.18107forward
CNT30704968Eucalyptus grandisPrunus avium28.2911.282.18101forward
CNT30318651Eucalyptus grandisAsparagus officinalis37.2539.2380.45133forward
CNT30115855Eucalyptus grandisOryza nivara40.3440.4584.72144forward
CNT30176173Eucalyptus grandisVigna angularis30.5335.7483.49109forward
CNT30113887Eucalyptus grandisFicus carica25.2111.2484.4490forward

Expression of CNT30535437

Peptides detected in this lncRNA

>peptide 1 (36 aa)
AFLLGAGSVWLLYPITVSTVMYRKSSVAMNSAMRAL*

>peptide 2 (90 aa)
GVSLGGGIGLALVPDHRQHRDVQEEQRGDELRDEGPVEGPLCQLLGVDERCRGRVVVVLGGKLGWLRHLDVLRHRRRTSFLLWCGRWGNG*

Sequence

>CNT30535437
GGCGTTTCTCTTGGGGGCGGGATCGGTCTGGCTCTTGTACCCGATCACCGTCAGCACCGTGATGTACAGGAAGAGCAGCGTGGCGATGAACTCCGCGATG
AGGGCCCTGTAGAAGGACCACTTTGTCAGCTCCTCGGCGTCGATGAGCGGTGCCGGGGGCGGGTCGTGGTAGTCCTTGGCGGCAAACTCGGCTGGCTCCG
CCACCTCGACGTCCTTCGCCATCGGAGACGGACCTCTTTCCTCCTGTGGTGTGGAAGATGGGGGAATGGATAGAACGAGAGAAAAGCTGGGGTGGGTTTT
GGCTAGGCTTGTTGATTAGAGAGTGGGAGTGAGGGAAAGTGGAGGGCGAAAAGAGGG