Detailed information on CNT30520361


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552571Setaria italicaOryza glaberrima985.3887.96216forward
CNT30436090Setaria italicaAegilops tauschii12.0127.6782.29288forward
CNT30254684Setaria italicaAvena sativa885.3386.46192forward
CNT30346584Setaria italicaEragrostis tef12.1336.2484.19291forward

Expression of CNT30520361

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MCYSGAAGRTRPSSAFYARRWARVCTTTTGCYCAVMHGGRASQVDGSSKNLEDVKLQRFLQ*

>peptide 2 (47 aa)
MGRERNPFCLDAFERAKLDILLLLYCYYFPSSPEQRNFFLFACAQTV*

>peptide 3 (32 aa)
MASWAIEACEGDPVALCRMLLWMFLNVPASVC*

>peptide 4 (50 aa)
MGRAKAGHGQTSRSVTSPPHAKGMPTTTRLPRFHLATRYTFAPSVALDQR*

>peptide 5 (67 aa)
QAIRLELLVHASKFSSHHHGLTFSKLKQDDRLLLKQVAKHFSKQVCQRQERLVAKKRRPSRHACPFL*

>peptide 6 (78 aa)
MAWDTITQGREGRGRTWPSVRALITRQGRLDPTDHVLQWSRGPDQAQLSFLRAPVGPRVYHHHRMLLCRHARWESQPG*

>peptide 7 (78 aa)
MHAPFSREGTGTPNFVSGLWLLARDFTSADEPPPGSSPRHILTGWVARRQAMDRHHVPSPRRLTRKGCPLPLGYPDFT*

>peptide 8 (86 aa)
MGHNHTREGGEGEDVAERACPHHTTRTTGPDGPCATVEPRAGPGPAQLFTRAGGPACVPPPPDVTVPSCTVGEPARLTGAVKIWRT*

>peptide 9 (30 aa)
MAWSWLSLAAAGLAGRVQRLACKKWMRVVGV

Sequence

>CNT30520361
CAGGCAATCAGATTAGAATTACTCGTGCATGCGTCCAAATTCTCGTCACATCATCATGGCCTAACATTTTCCAAACTAAAACAAGATGACAGGCTACTTC
TAAAGCAAGTGGCCAAGCATTTCTCCAAGCAAGTCTGTCAGCGTCAGGAACGATTAGTGGCTAAGAAAAGGAGACCCTCTCGTCATGCATGCCCCTTTCT
CTAGGGAAGGAACTGGAACACCAAACTTCGTTAGTGGCCTCTGGCTTTTAGCGCGCGACTTCACCTCGGCCGATGAACCACCACCAGGGTCCTCACCACG
GCATATTTTGACGGGATGGGTCGCGCGAAGGCAGGCCATGGACAGACATCACGTTCCGTCACCTCGCCGCCTCACGCGAAAGGGATGCCCACTACCACTA
GGCTACCCCGATTTCACCTAGCCACACGCTACACGTTTGCGCCTAGCGTTGCTTTGGACCAGCGGTGAATACGAATTCTTCAAATTCACTCCGTGTGTGG
TTACGTTTCAGTACGTACCATACGGTGGTCCGTGGAACCGTAGTACACGTTGGAGGATTTCAAGAACCAACGGTACGGTGCTAATAATTCATCATGGAGG
GGTGAGACGCTAGAGTCTAGAGAGGAGGCTCACATGGCATGGGACACAATCACACAAGGGAGGGAGGGGAGGGGGAGGACGTGGCCGAGCGTGCGTGCCC
TCATCACACGACAAGGACGACTGGACCCGACGGACCATGTGCTACAGTGGAGCCGCGGGCCGGACCAGGCCCAGCTCAGCTTTTTACGCGCGCCGGTGGG
CCCGCGTGTGTACCACCACCACCGGATGTTACTGTGCCGTCATGCACGGTGGGAGAGCCAGCCAGGTTGACGGGAGCAGTAAAAATCTGGAGGACGTAAA
ATTGCAGAGATTTCTACAGTAGTACTCCGTAGTAAAATTTCAAGTCTAGAGATAAGGTTGGAGCTGATTAGCCCCGGGTCTCTCTATCTGTATTTATTTA
CTTTACTGTTAGGTCCGGGGAGTCATGGCTAGCTGGGCTATTGAGGCCTGTGAGGGTGACCCGGTTGCGCTCTGCCGCATGCTCCTGTGGATGTTCTTGA
ATGTTCCAGCAAGTGTGTGTTAATAACGGTCATTATCAAGACTACGGAAGGCTTAATGACAGTTCTCCGTGTGTAGTGTACTAACCCCTTGAAAATTAAG
TTGTGATATTTAGAATATTTGGAGCTTAGGCATCCACACATCTCTTTCAACGGTCAATTATTTCTTTCTTTTGGACAATGGTTTAGCTGAATTTCAAGCT
TTTGTTCCTCTATCTAACAATAAGCAGCCTCGATGAATAACTTGTGTAACTAGGTACAGACTACTCTAAAAAAGACTAGGTGCAGACAAAATGAATCGTA
AGTGAACCTTTACCTTTCTATCCCCAGCAAAAAAACGTTCTATGGGCCGGGAAAGAAATCCCTTCTGCCTGGACGCCTTTGAAAGAGCCAAACTGGATAT
TCTCTTGCTTTTATATTGTTATTATTTTCCTTCTTCACCGGAACAAAGGAATTTCTTTTTGTTCGCATGTGCCCAAACAGTATAGATGGGCAAGATTAGA
GCATGCTAGCATCGCTTGAGCTCTAATTAAGCTAAGTTCGCACAGACATGAAGTAAAAGAAGCTAATAAGCGAGCAAGCTAGCAGATCGAGAGAGAGAAA
TAAATAAAAGAAGAAAAAAGCAGGAGGCCGTGGCGTTGGTCGGGTGCTCACCGGAACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAG
ACGGTGTAGACGAGGACGAAGGTGCCGATGATCTCGGCGCCGAGGCCGGTGCCGCGGGAGTATCCGGAGGCGAGGGAGTTGGCGCCGCCGCCGTACCTGT
CGAAGTAGGCGCTCTGGAACGCCTTGACGAGGCCGACGCCGCAGATGGCACCCAGGCACTGCGCCACGATGTAGAGCAGCGCGCGCACCAGGGACACCTT
GCGCGCCAGGAAGAGGCCGAAGGTGACGGCTGGGTTGATGCCCACGCGATGCCGAGGATGCCCACGCCGCCGCACGCGTCGGTGCCGGCCACGTTCGGGT
CCGTCTGGTGCTTGTAACCGATGACGGTGAGCACGGTGATGTAGAGGAAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGACCAGGA
ACCCAGCTCTGCCGCGTCGATCAGCGGCGCCGGGGGAGGGTCCGTGTAGTCCTTGGCGGCGAACTCGCCGCCGCCGGCGCCGCTCTCGATCACGTCGTCC
TTGCCCATGGCTTGGTCTTGGCTTAGCTTGGCAGCTGCGGGACTAGCCGGCCGGGTGCAGAGGTTGGCTTGCAAGAAATGGATGAGAGTGGTGGGAGTG