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Detailed information on CNT30552571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Oryza glaberrimaOryza sativa80.2426.591.13203forward
CNT30671777Oryza glaberrimaSetaria viridis33.231.790.4884forward
CNT30520361Oryza glaberrimaSetaria italica85.38987.96216forward
CNT30531266Oryza glaberrimaEucalyptus grandis32.0219.1587.6581forward
CNT30546615Oryza glaberrimaIpomoea triloba35.5733.4685.5690forward
CNT30375565Oryza glaberrimaArabidopsis thaliana22.1322.6787.556forward
CNT3020673Oryza glaberrimaCitrullus lanatus25.696.1186.1565forward
CNT3070603Oryza glaberrimaQuercus suber37.9425.2682.2996forward
CNT30180948Oryza glaberrimaSecale cereale41.55.1297.14105forward
CNT30297784Oryza glaberrimaTriticum aestivum39.9211.5388.12101forward
CNT30387873Oryza glaberrimaTriticum turgidum72.3336.0291.8183forward
CNT30568278Oryza glaberrimaActinidia chinensis26.0913.3990.9166forward
CNT30586754Oryza glaberrimaMusa acuminata33.231.1192.8684forward
CNT30435838Oryza glaberrimaAegilops tauschii43.0843.7891.74109forward
CNT30254684Oryza glaberrimaAvena sativa77.8787.5692.89197forward
CNT30612661Oryza glaberrimaArabis alpina30.8326.9985.978forward
CNT30465661Oryza glaberrimaSaccharum spontaneum22.1312.991.0756forward
CNT3013604Oryza glaberrimaZea mays43.087.9696.33109forward
CNT30213185Oryza glaberrimaHelianthus annuus30.4313.9284.4277forward
CNT30681057Oryza glaberrimaTriticum urartu85.3821.291.67216forward
CNT30346584Oryza glaberrimaEragrostis tef97.6330.7684.62247forward
CNT30477240Oryza glaberrimaArabidopsis halleri30.8313.5488.4678forward
CNT30362596Oryza glaberrimaSorghum bicolor53.7523.0185.29136forward
CNT30355349Oryza glaberrimaLactuca sativa26.4811.1786.5767forward
CNT30148622Oryza glaberrimaBrachypodium distachyon24.925.8292.0663forward
CNT30102682Oryza glaberrimaOryza rufipogon34.7819.397.7388forward
CNT30116009Oryza glaberrimaOryza nivara79.8424.8299.5202forward
CNT30604398Oryza glaberrimaOryza punctata83.798.9789.15212forward
CNT30112149Oryza glaberrimaFicus carica21.346.8890.7454forward
CNT3039904Oryza glaberrimaMarchantia polymorpha32.814.9384.3483forward

Expression of CNT30552571

Peptides detected in this lncRNA

>peptide 1 (82 aa)
VGVAGVALGVGGGEDGVDEHEGADDLRAEAGALGVAVAELVGSAAVPRVVRALEPLDEPHAADGAQALRDDVQNRPDQRHLPR

Sequence

>CNT30552571
ATGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCCGCGCCGAGGCCGGTGCCCT
TGGAGTAGCCGTCGCTGAGCTCGTTGGCTCCGCCGCCGTACCGCGCGTAGTACGAGCTCTGGAACCCCTTGACGAGCCCCACGCCGCAGATGGCGCCCAG
GCACTGCGCGATGATGTACAGAACCGCCCTGATCAGCGACACCTTCCTCGCCA