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Detailed information on CNT30289867


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XUA6|PIP23_ORYSJ, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Triticum aestivumOryza sativa61.7437.0886.62284forward
CNT30671184Triticum aestivumSetaria viridis33.9127.7691.67156forward
CNT30520523Triticum aestivumSetaria italica57.8311.1583.46266forward
CNT30535437Triticum aestivumEucalyptus grandis31.9641.1883.67147forward
CNT30712585Triticum aestivumGlycine max11.322.2290.3852forward
CNT30180948Triticum aestivumSecale cereale68.2615.3286.31314forward
CNT30221631Triticum aestivumHordeum vulgare35.8711.8495.15165forward
CNT30387873Triticum aestivumTriticum turgidum72.1765.3596.69332forward
CNT30592144Triticum aestivumMusa acuminata43.2686.5284.42199forward
CNT30541063Triticum aestivumBrassica napus22.1712.8585.29102forward
CNT30437070Triticum aestivumAegilops tauschii74.7869.6493.6344forward
CNT30450547Triticum aestivumSaccharum spontaneum18.9127.9785.0687forward
CNT30139319Triticum aestivumLolium perenne55.4321.7987.84255forward
CNT30227632Triticum aestivumAnanas comosus34.5723.5985.53159forward
CNT30681057Triticum aestivumTriticum urartu87.8339.6593.32404forward
CNT30346584Triticum aestivumEragrostis tef66.9638.3685.06308forward
CNT30477244Triticum aestivumArabidopsis halleri24.1318.8181.98111forward
CNT30362596Triticum aestivumSorghum bicolor63.749.5882.59293forward
CNT30102464Triticum aestivumOryza rufipogon55.221086.61254forward
CNT30116009Triticum aestivumOryza nivara48.2627.2786.04222forward
CNT30604398Triticum aestivumOryza punctata68.4813.3286.03315forward

Expression of CNT30289867

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RRRRCRRARRNSPNVTAGLMWPPETPAVQ*

>peptide 2 (28 aa)
MSLAIVAASTDRQARVGVCAQDANALSSL

>peptide 3 (40 aa)
MPPNAQAMPRMPTPLQAASAALGPAGSAWCLYPMTVATVM*

Sequence

>CNT30289867
GCGGAGAAGACGGTGTAGACGAGCACGAAGGAACAGCCCGAACGTCACCGCCGGGTTGATGTGGCCACCGGAAACCCCGGCAGTGCAGTAGACGAGCACG
AAGATCATGCCGCCGAACGCCCAGGCGATGCCGAGGATGCCGACGCCGCTGCAGGCCGCGTCGGCAGCATTGGGGCCGGCGGGGTCCGCCTGGTGCTTGT
ACCCGATGACAGTGGCCACGGTGATGTAGAGGAAGAGCAGCGTGGCCACGAACTCGGCGATGACCGCGCGGTACAGGGACCATTTAGTCAGCTCCTCGGC
GTCGAAGAGCGGCGCCGGCGGCGGGTCAGAGTAGTCCTTGGCTCCGTACTCCCCTCCGGGGGGCGCCGCCTCGATGTCCTTGGCCATCGTCGCTGCCTCG
ACTGATCGACAAGCTAGGGTGGGTGTCTGTGCTCAAGATGCGAATGCGCTTAGCTCTCTG