Detailed information on CNT3012516


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Zea maysOryza sativa15.1327.4288.57210forward
CNT30180948Zea maysSecale cereale25.2217.0792.57350forward
CNT30221191Zea maysHordeum vulgare6.8444.8188.4295forward
CNT30681057Zea maysTriticum urartu14.720.0290.69204forward
CNT30346584Zea maysEragrostis tef15.226.2888.15211forward
CNT30148622Zea maysBrachypodium distachyon14.783.6191.18204forward
CNT30102464Zea maysOryza rufipogon24.7813.5488.37344forward

Expression of CNT3012516

Peptides detected in this lncRNA

>peptide 1 (41 aa)
PLTRSTTRPEICLLLLCRQWRSVDGSGKKNAVLSFASAQWR*

>peptide 2 (40 aa)
MHGPWKNKIVRRRIFQKQNKNSIKRNTSVYGKEIHLGWSK*

>peptide 3 (46 aa)
MFHRVCVNNGHYHDYESLNDAGVLVLVSDECQKIWSSRILTQHMID*

>peptide 4 (35 aa)
MEQIIDVLLSANCCGLAASLKICASFKICASHSAA*

>peptide 5 (36 aa)
MDILLPFCICCATPFPLSARERKFSFFTCAMYIAEI*

>peptide 6 (30 aa)
MEMMACMHRKIRPELFNYMSGPGVMPMVGP*

>peptide 7 (31 aa)
MGAVKKMQCFLSRLHNGDDGMHAQKDKAGAL*

Sequence

>CNT3012516
CGCCACTGACCCGTAGCACTACCCGGCCCGAAATTTGTTTACTGTTGCTGTGCCGTCAATGGCGGTCAGTGGATGGGAGCGGTAAAAAAAATGCAGTGCT
TTCTTTCGCGTCTGCACAATGGAGATGATGGCATGCATGCACAGAAAGATAAGGCCGGAGCTCTTTAATTATATGTCCGGGCCGGGGGTGATGCCGATGG
TTGGCCCCTAGCCTGACCATGACGTGGATGCACTCCCACTCGAATGTTCCACCGAGTGTGCGTTAATAACGGTCATTATCACGACTATGAAAGCCTTAAT
GACGCAGGGGTGCTAGTACTGGTGAGTGATGAGTGCCAGAAGATTTGGAGCTCACGCATCCTGACACAACACATGATTGATTGATTCGCCGGCCTTCCAC
ACGTTTTAACTTTATGAAGATTTTAATCCTCATGGAAGCCACGAACAGAGTAATTTAGAGCAGTACATAAACATGCATGGTCCATGGAAGAACAAAATAG
TCCGCAGGAGAATCTTTCAAAAACAAAACAAAAATAGTATAAAACGAAACACTTCAGTCTACGGCAAAGAAATTCATCTTGGATGGAGCAAATAATAGAT
GTGCTGCTGAGTGCTAACTGTTGTGGCCTTGCTGCTAGCTTGAAAATATGTGCTAGCTTCAAAATATGTGCTAGCCACAGCGCTGCGTAGCACAGCCGAT
CAAGAAAAAATGGATATTCTCCTGCCTTTTTGTATTTGTTGTGCTACTCCTTTCCCTCTCTCTGCCCGTGAACGGAAATTTTCTTTTTTCACGTGCGCCA
TGTACATTGCCGAGATTTGAGCATGTTAGCTAGCATAACTTGAGCTCTAATTAAGCTCGCCTGGGACTCAACTTACGACTGATGCCAACTGATTAAGACA
AGCGAACTTTTAAGCTAGTTTTAAAAATAAAATACTACTACTCCCAACAAACAGCTACTTACTAGCAGGTAGCAGCAGACCGAGGGTCGAGACAAAAACA
AAACAAAAAAAAAAGGAGAAGGCGGTGGCGTTGGTCGGGTGCTCACCGGGACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGT
GTAGACGAGCACGAAGGTGCCGATGATCTCGGCGCCGAGGCCGGTGCCGCGGGAGTAGCCGGAGGCGAGCGAGTTGGCGCTCTGGAACGCCTTGACGAGG
CCGACGCCGCAGATGGCGCCGAGGCACTGCGCCACGATGTAGAGCAGCGCGCGCACCAGGGAGACCTTGCGCGCCAGGAAGAGGCCGAAGGTGACGGCGG
GGTTGATGTGGCCCCCCGAGATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCCAGCACGCC