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Detailed information on CNT30362596


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 5e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Sorghum bicolorOryza sativa38.9230.0388.26230forward
CNT30671184Sorghum bicolorSetaria viridis38.5840.5786.84228forward
CNT30520391Sorghum bicolorSetaria italica83.7620.2291.52495forward
CNT30180948Sorghum bicolorSecale cereale55.51689.33328forward
CNT30289867Sorghum bicolorTriticum aestivum49.5863.782.59293forward
CNT30221219Sorghum bicolorHordeum vulgare23.6921.0285140forward
CNT30385683Sorghum bicolorTriticum turgidum11.8431.5394.2970forward
CNT30568277Sorghum bicolorActinidia chinensis1121.6790.7765forward
CNT30592144Sorghum bicolorMusa acuminata34.6989.1380.98205forward
CNT30552571Sorghum bicolorOryza glaberrima23.0153.7585.29136forward
CNT30437070Sorghum bicolorAegilops tauschii32.9939.4785.13195forward
CNT30254684Sorghum bicolorAvena sativa23.0160.4485.29136forward
CNT30659451Sorghum bicolorTriticum dicoccoides19.832.5991.45117forward
CNT30139319Sorghum bicolorLolium perenne32.4916.4184.9192forward
CNT30227632Sorghum bicolorAnanas comosus25.3822.2684.67150forward
CNT30681057Sorghum bicolorTriticum urartu41.4624.0484.08245forward
CNT30346584Sorghum bicolorEragrostis tef40.9530.1490.91242forward
CNT30318651Sorghum bicolorAsparagus officinalis25.8945.1383.01153forward
CNT30148068Sorghum bicolorBrachypodium distachyon31.8132.4789.36188forward
CNT30102464Sorghum bicolorOryza rufipogon43.4910.1193.39257forward
CNT30115855Sorghum bicolorOryza nivara29.7849.4486.93176forward
CNT30604398Sorghum bicolorOryza punctata57.8714.4790.94342forward
CNT30113851Sorghum bicolorFicus carica13.8729.690.2482forward

Expression of CNT30362596

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MPPNAHAMPSTPTPPHAASAPDAVASVWCLYPITVATVMYRNSSVAMNSAITARYSDQEPSSAASISGAGGGSV*

Sequence

>CNT30362596
GTGGTGGTAAAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCGGCGCCGAGCCCGGTGCCGCGTGAGTAGCCGGAGGCGAGCGAGTTGGCGC
CGCCGCCGTACCTGTCGAAGTAGGCGCTCTGGAACGCCTTGACGAGGCCGAAGGTGACGGCCGGGTTGATGTGGCCGCCGGAGATCCCCGCCGTGCAGTA
GACGAGGACGAAGATCATGCCGCCGAACGCCCACGCGATGCCCAGCACGCCCACGCCGCCGCACGCGGCGTCGGCGCCCGACGCCGTCGCGTCCGTCTGG
TGCTTGTACCCGATCACGGTGGCGACGGTGATGTACAGGAACAGCAGCGTCGCGATGAACTCGGCGATCACGGCGCGGTACAGCGACCAGGAACCCAGCT
CCGCCGCGTCGATCAGTGGAGCTGGCGGTGGGTCCGTGTAGTCCTTGGCAGCGAACTCGCCGCCGCCGGCGCCGCTCTCGATCACGTCGTCCTTGCCCAT
GGCTTCGCTTAGCAGCTGCGAGAGAGTGAGTGGGAGAGGTGGCTACGCTTGCAAGGAATGGGAATGGATGAGAGCGTGAGGTGGGGGGAGT