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Detailed information on CNT30180948


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H5N9|PIP21_ORYSJ, E-value = 2e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Secale cerealeOryza sativa20.153.7986.65412forward
CNT30671184Secale cerealeSetaria viridis11.2741.187.45231forward
CNT30520523Secale cerealeSetaria italica21.0718.1190.05432forward
CNT30535437Secale cerealeEucalyptus grandis845.9481.71164forward
CNT30375565Secale cerealeArabidopsis thaliana3.0225.187.162forward
CNT30289867Secale cerealeTriticum aestivum15.3268.2686.31314forward
CNT30385683Secale cerealeTriticum turgidum6.3959.0197.71131forward
CNT30569510Secale cerealeActinidia chinensis439.4293.982forward
CNT30592144Secale cerealeMusa acuminata9.5184.7886.67195forward
CNT3085023Secale cerealeVigna radiata5.9525.2186.07122forward
CNT30552571Secale cerealeOryza glaberrima5.1241.597.14105forward
CNT30254684Secale cerealeAvena sativa5.852.8992.44119forward
CNT30659451Secale cerealeTriticum dicoccoides5.7132.5997.44117forward
CNT30612661Secale cerealeArabis alpina3.1722.4989.2365forward
CNT30450547Secale cerealeSaccharum spontaneum6.2941.4882.17129forward
CNT3012516Secale cerealeZea mays17.0725.2292.57350forward
CNT30218729Secale cerealeKalanchoe fedtschenkoi4.0528.6286.7583forward
CNT30214941Secale cerealeHelianthus annuus3.4627.8485.9271forward
CNT30681057Secale cerealeTriticum urartu20.3440.9287.77417forward
CNT30346584Secale cerealeEragrostis tef17.2243.9688.1353forward
CNT30362596Secale cerealeSorghum bicolor1655.589.33328forward
CNT30595794Secale cerealeOryza meridionalis3.1229.2293.7564forward
CNT30370019Secale cerealeOryza glumipatula7.1728.9484.35147forward
CNT30148622Secale cerealeBrachypodium distachyon10.0584.4393.2206forward
CNT30576241Secale cerealeOryza barthii7.1722.1784.35147forward
CNT30604398Secale cerealeOryza punctata22.3419.3790.17458forward

Expression of CNT30180948

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPPKAQAMPSTPTPPHAASAALFTAGSVWCLYPMTVATVM*

>peptide 2 (44 aa)
MERGEVVGKRQQGEGCVVCVRWREGLVSLMERKTELGVISSSEP*

>peptide 3 (29 aa)
MAMRAPAVRIMRLLEGTQSRERPATCRPF*

>peptide 4 (39 aa)
MKRIVWPGGMACLPGRESRVRCAWGRWRRRRCRRARRCR*

>peptide 5 (46 aa)
MAWPCVLRPSASCDCWRAPRVVKGRPLAAPFDSTGRKLGGVATSVE*

>peptide 6 (47 aa)
MGSGKAAEHHVLSPRDCTGALAKRDARTIHPSPDGSTLTQSSNSEFS*

>peptide 7 (29 aa)
MYSSSFVFILDDISRIKEYHSSHFVHRIG*

Sequence

>CNT30180948
CCCCTCCAAATTACTTTCTGAACTGAACTAATCGGCACTCCCCGTGCCGGGTCGTTTTCAGGTTGCTGGTTCGCCAAGCATGGCATGGCCATGCGTGCTC
CGGCCGTCCGCATCATGCGACTGCTGGAGGGCACCCAGAGTCGTGAAAGGCCGGCCACTTGCCGCCCCTTTTGATTCAACGGGAAGGAAACTAGGTGGAG
TGGCAACGAGCGTGGAGTGAAGGCTCCTTTTCCCTCTCCCTCCGGGCACATACCCCGGCCTGCCTCAGTGCGCGCTTCACCACCCCAAAAGACCAAAGCC
GGTGAACGAGTACCACGGCATATTTTGATGGGATCGGGCAAAGCGGCCGAACATCACGTTTTGTCACCTCGAGACTGCACTGGTGCCCTCGCCAAAAGGG
ATGCTCGCACCATCCATCCATCACCGGACGGAAGCACCCTAACCCAGAGTAGTAACTCTGAATTTAGCTAGCCACATGACGCTAACGGGAGGTGATATGT
ACTGGCTCACTGACACTGACCAATAATTCATCGTGGAGGGGGTGGGGGGCCTGGGCAATAATTCACCAGAGAGAGCTGGACGAAACGAAATCGACCATGT
GTTATCACACCCATACAGCTCAGCTTACTGTTGGGGCCACATGGGCCGAGGCCATGGATGGGACTTAACTGGAATATAGTAGTAATAAACATAAACTAGT
TACGGTAGCAGTAACTGTGAGGCCACGCGGACGTGTACTAGAGATTCATCTGGATTCTTCGTTCTTGTGTCAATTGCAGTGAAAGTACAGCTGTTACGAC
CCACGTTTTACGCCTACGGGAAGACTTATGTCTACAGTTATGGAGAAAACATTTTCTTAAAGCATCATGGCAGTACTTCCTTACTTATCAAAACAAAATA
CCTGACATTTCATATGTACTCCTCCTCCTTTGTGTTCATTCTAGATGATATATCTAGGATAAAGGAGTATCATTCTAGCCATTTTGTTCATCGTATAGGA
TAGGATATTCTTGCTTTCCCCACTTTTTGTTCATACGTATGCATCATCCTCCTCATTTGGACGATCTATCCTCATGGCATGCCATCTTCAGTTAAGCTCT
AACAACTAGTAGCTTTACCTTTCTTATACGAACAAGAAAACTTTACTTTATGAAAAGAATTGTGTGGCCAGGAGGCATGGCGTGCTTACCGGGACGTGAG
AGTCGCGTGCGCTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCCGCGGCGAGGCCGGTGCCCTTGGAGTA
GCCGGCGGCGAGCGCGCTCTGGAAGGCCTTGACGAGGCCGACCCCGCACATGGCGCCGAGGCACTGCGCGATCATGTAGAGCAGCGCGCGGACCAGGGAG
ACCTTGCGCGCCAGGAAGAGGCCGAAGGTGACGGCCGGGTTGATGTGGCCCCCGGAGATGCCGGCGGTGCAGTAGACGAGGACGAAGATCATGCCGCCGA
AGGCCCAGGCGATGCCGAGCACGCCCACGCCGCCGCACGCCGCGTCGGCGGCGCTGTTCACCGCGGGGTCCGTCTGGTGCTTGTACCCGATGACGGTGGC
CACGGTGATGTAGAGGAAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGACCACGACGCCAGCTCCGCCGCGTCGATCAGCGGGGCC
GGCGGCGGGTCCGTGTAGTCCTTGGCCGCGAAGTCGCCTCCGCCGCCGGTCTCCGTCACCTCGTCCTTGGCCATCGGCTTTGCTGTTTCTTCTCGCTGCA
AACCTGAGTAGAAAAAATGGAGGTGGAGCTTGTGTGTGGTGGGGGAGTGACGAGAGGAAGAGGAAGGTGGTATTTATGGAGCGGGGAGAAGTGGTAGGTA
AAAGACAACAAGGCGAAGGGTGTGTGGTGTGTGTGCGATGGAGAGAGGGGCTCGTGTCCTTGATGGAACGGAAAACTGAGCTAGGAGTAATTTCTTCTTC
TGAACCCTAAAAGATAAAGAATTTTATGTATGCGAGTAGGAGTATTTAAT