« Back to Oryza meridionalis search


Detailed information on CNT30595794


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 7e-46

BLAST vs NONCODE:
NONGMAT001758, E-value = 4e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Oryza meridionalisSetaria viridis86.316.9594.71189forward
CNT30519732Oryza meridionalisSetaria italica86.365.8594.18189forward
CNT30640424Oryza meridionalisNymphaea colorata52.5113.8487.83115forward
CNT30316259Oryza meridionalisCorylus avellana42.4729.1583.8793forward
CNT30549105Oryza meridionalisIpomoea triloba42.0116.1782.6192forward
CNT30515171Oryza meridionalisJuglans regia40.649.4384.2789forward
CNT3020673Oryza meridionalisCitrullus lanatus52.9710.9181.9116forward
CNT30159576Oryza meridionalisPistacia vera27.857.788.5261forward
CNT30180948Oryza meridionalisSecale cereale29.223.1293.7564forward
CNT30297885Oryza meridionalisTriticum aestivum102.7436.0684.89225forward
CNT30221117Oryza meridionalisHordeum vulgare29.2229.0998.4464forward
CNT30394052Oryza meridionalisTriticum turgidum102.7415.7284.89225forward
CNT30564991Oryza meridionalisActinidia chinensis74.4340.3585.89163forward
CNT30590202Oryza meridionalisMusa acuminata83.1120.1384.07182forward
CNT3084566Oryza meridionalisVigna radiata35.1613.0788.3177forward
CNT30542732Oryza meridionalisBrassica napus34.711.3185.5376forward
CNT30437220Oryza meridionalisAegilops tauschii51.619.7690.27113forward
CNT30658043Oryza meridionalisTriticum dicoccoides25.1120.0796.3655forward
CNT30463151Oryza meridionalisSaccharum spontaneum57.0824.8593.6125forward
CNT30131632Oryza meridionalisLolium perenne77.1777.1789.94169forward
CNT3013604Oryza meridionalisZea mays28.774.693.6563forward
CNT30232947Oryza meridionalisAnanas comosus45.2141.7790.9199forward
CNT30129030Oryza meridionalisCorymbia citriodora32.4212.0392.9671forward
CNT30681640Oryza meridionalisTriticum urartu62.111.5988.24136forward
CNT30346584Oryza meridionalisEragrostis tef24.666.7290.7454forward
CNT30366304Oryza meridionalisSorghum bicolor90.4139.9292.93198forward
CNT30355349Oryza meridionalisLactuca sativa27.41086.6760forward
CNT30706529Oryza meridionalisPrunus avium44.296.3187.6397forward
CNT30325169Oryza meridionalisAsparagus officinalis92.6976.686.7203forward
CNT30148068Oryza meridionalisBrachypodium distachyon28.3110.7191.9462forward
CNT30495761Oryza meridionalisDigitaria exilis26.0314.5498.2557forward
CNT30116072Oryza meridionalisOryza nivara88.1323.5199.48193forward
CNT3050369Oryza meridionalisCucumis sativus91.3244.3579200forward

Expression of CNT30595794

Peptides detected in this lncRNA

>peptide 1 (71 aa)
GDAGGAVDEREDHASEGPGDALDADGGALGGGLGDPHDGEDGDVEEEEGGDELGDPGPVERPRLELPWLEQR

>peptide 2 (37 aa)
RRCRRCSRRARRSCLRRTRRCPGCRRWRTWRRTWRPP*

>peptide 3 (31 aa)
MPPKDQAMPWMPTVAHLEEDLETPMTVRMVM*

Sequence

>CNT30595794
CGGAGATGCCGGCGGTGCAGTAGACGAGCGCGAAGATCATGCCTCCGAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTGGAGGAGGACTT
GGAGACCCCCATGACGGTGAGGATGGTGATGTAGAGGAAGAGGAAGGTGGCGACGAACTCGGCGATCCCGGCCCGGTAGAAAGACCACGACTTGAGCTCC
CCTGGCTCGAACAGCGGCG