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Detailed information on CNT30387873


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Triticum turgidumSetaria viridis29.5326.6992150forward
CNT30520589Triticum turgidumSetaria italica79.7217.5781.23405forward
CNT30535437Triticum turgidumEucalyptus grandis28.9441.1884.35147forward
CNT30190473Triticum turgidumSecale cereale52.9535.6385.5269forward
CNT30289867Triticum turgidumTriticum aestivum65.3572.1796.69332forward
CNT30221631Triticum turgidumHordeum vulgare32.4811.8496.36165forward
CNT30552571Triticum turgidumOryza glaberrima36.0272.3391.8183forward
CNT30437070Triticum turgidumAegilops tauschii61.8163.5692.99314forward
CNT30254684Triticum turgidumAvena sativa35.0479.1191.57178forward
CNT30450547Triticum turgidumSaccharum spontaneum17.1327.9786.2187forward
CNT30139319Triticum turgidumLolium perenne44.2919.2387.11225forward
CNT30227632Triticum turgidumAnanas comosus31.323.5986.16159forward
CNT30681057Triticum turgidumTriticum urartu62.0130.9193.65315forward
CNT30346584Triticum turgidumEragrostis tef35.6322.5486.19181forward
CNT30318651Triticum turgidumAsparagus officinalis30.1245.1379.74153forward
CNT30116009Triticum turgidumOryza nivara77.9548.6588.38396forward
CNT30604398Triticum turgidumOryza punctata36.027.7487.43183forward

Expression of CNT30387873

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAPRRCRGCRRRCRPRRQHWGRRGLPGACTR*

>peptide 2 (31 aa)
AALGVCGGEDGVDEHEGADDLGREAGALGVA*

>peptide 3 (33 aa)
MPRMPTPLQAASAALGPAGSAWCLYPMTVATVM*

Sequence

>CNT30387873
CGCTGCGCTTGGGGTCTGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCGGCCGCGAGGCCGGTGCCCTTGGAGTAGCCTGAGCT
GAGCTCGTTGGCGCCACCGCCATAGCGCACGTAGAAGGCGCTCTGGAACCCCTTGACGAGCCCCACGCCGCAGATGGCGCCCAGGCGATGCCGAGGATGC
CGACGCCGCTGCAGGCCGCGTCGGCAGCACTGGGGCCGGCGGGGTCTGCCTGGTGCTTGTACCCGATGACGGTGGCCACGGTGATGTAGAGGAAGAGCAG
CGTGGCCACGAACTCGGCGATGACCGCGCGGTACAGGGACCATTTAGTCAGCTCCTCGGCGTCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTG
GCCCCGTACTCCCCACCGGGGGGCGCCGCCTCGATGTCCTTGGCCATCGTCGCTGCCTCGACTAATCGACAAGCTAGGGTCGGTGTGTGTGCTAAGATGC
TAATGCGC