Detailed information on CNT30575194


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y1E6|PIP28_ORYSJ, E-value = 3e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Oryza barthiiOryza sativa10027.59100205forward
CNT30670956Oryza barthiiSetaria viridis58.0510.6789.92119forward
CNT30520501Oryza barthiiSetaria italica52.684.4992.59108forward
CNT30640424Oryza barthiiNymphaea colorata56.113.8487.83115forward
CNT30531266Oryza barthiiEucalyptus grandis32.215.687.8866forward
CNT30546615Oryza barthiiIpomoea triloba27.3220.8291.0756forward
CNT3019525Oryza barthiiCitrullus lanatus33.6631.5188.4169forward
CNT30728378Oryza barthiiCorchorus capsularis27.324.4691.0756forward
CNT30190473Oryza barthiiSecale cereale40.4910.9993.9883forward
CNT30298239Oryza barthiiTriticum aestivum61.4618.6792.06126forward
CNT30221219Oryza barthiiHordeum vulgare54.1516.6791.89111forward
CNT30393291Oryza barthiiTriticum turgidum61.469.3992.06126forward
CNT30564990Oryza barthiiActinidia chinensis33.6616.3188.4169forward
CNT3084566Oryza barthiiVigna radiata21.957.6493.3345forward
CNT30542732Oryza barthiiBrassica napus28.788.7888.1459forward
CNT30612661Oryza barthiiArabis alpina31.7122.4986.1565forward
CNT30465661Oryza barthiiSaccharum spontaneum31.7114.9895.3865forward
CNT30139319Oryza barthiiLolium perenne47.88.3892.8698forward
CNT3013604Oryza barthiiZea mays33.665.0494.269forward
CNT30129030Oryza barthiiCorymbia citriodora21.957.6395.5645forward
CNT30680173Oryza barthiiTriticum urartu32.227.1696.9766forward
CNT30346584Oryza barthiiEragrostis tef21.955.695.5645forward
CNT30477240Oryza barthiiArabidopsis halleri31.7111.2887.6965forward
CNT30366377Oryza barthiiSorghum bicolor56.5923.3493.97116forward
CNT30148068Oryza barthiiBrachypodium distachyon28.2910.0289.6658forward
CNT30115961Oryza barthiiOryza nivara10018.74100205forward
CNT30603734Oryza barthiiOryza punctata55.618.6894.74114forward
CNT30112149Oryza barthiiFicus carica33.668.7992.7569forward
CNT3065055Oryza barthiiSelaginella moellendorffii33.6618.785.5169forward
CNT3050369Oryza barthiiCucumis sativus65.3729.7184.33134forward
CNT3039904Oryza barthiiMarchantia polymorpha33.664.188.4169forward

Expression of CNT30575194

Peptides detected in this lncRNA

>peptide 1 (66 aa)
DGEADGERRQDGDVGVPGVALGVGGGEDGVDEDEDHAAERPRDALDPHGGALGRRLVHPHHRQDADV

>peptide 2 (65 aa)
RRRSRWGAAPGWGRGSPWRCAWRRWRRRRCRRGRRSCRRTTTRCPGSPRWRTWTPTCSPPSPSGC*

>peptide 3 (31 aa)
MPPNDHAMPWIPTVAHLDADLFTPITVRMLMY

>peptide 4 (30 aa)
KTAKPMGSGARMGTWESLALRLASVAEKTV*

Sequence

>CNT30575194
AAGACGGCGAAGCCGATGGGGAGCGGCGCCAGGATGGGGACGTGGGAGTCCCTGGCGTTGCGCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGA
CGAAGATCATGCCGCCGAACGACCACGCGATGCCCTGGATCCCCACGGTGGCGCACTTGGACGCCGACTTGTTCACCCCCATCACCGTCAGGATGCTGAT
GTACA