Detailed information on CNT30112022


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070603Ficus caricaQuercus suber25.1818.6885.9271forward
CNT30159576Ficus caricaPistacia vera29.4310.4891.5783forward
CNT30589490Ficus caricaMusa acuminata27.326.5589.6177forward
CNT30227873Ficus caricaAnanas comosus29.4313.590.3683forward
CNT30646760Ficus caricaRosa chinensis58.1639.1481.71164forward
CNT30346584Ficus caricaEragrostis tef23.48.2289.3966forward
CNT30477240Ficus caricaArabidopsis halleri29.4314.4187.9583forward
CNT30355344Ficus caricaLactuca sativa46.4543.8186.26131forward
CNT30704435Ficus caricaPrunus avium62.4126.6379.55176forward
CNT30120547Ficus caricaCitrus clementina29.4332.6886.7583forward

Expression of CNT30112022

Peptides detected in this lncRNA

>peptide 1 (92 aa)
PPDTAPPCTAPPSPATPSSPRTAPTSPPVHKNEDHAPEGPGNAEDSNAVACVCLVLSLVADHGQDRHVEKQKRRYELGDQSSVERPLSQLLRV

>peptide 2 (59 aa)
RPQTLRHHVQHRPHQRHLPRQEQPQRHRRYTRMKIMPPKAQAMPRIPTPSHASASFCLL*

>peptide 3 (32 aa)
APRHCATMYSTALTSDTFLAKNSPNVTAGTQE*

Sequence

>CNT30112022
CGCCCCCAGACACTGCGCCACCATGTACAGCACCGCCCTCACCAGCGACACCTTCCTCGCCAAGAACAGCCCCAACGTCACCGCCGGTACACAAGAATGA
AGATCATGCCCCCGAAGGCCCAGGCAATGCCGAGGATTCCAACGCCGTCGCATGCGTCTGCCTCGTTCTGTCTCTTGTAGCCGATCACGGTCAGGACCGT
CACGTAGAGAAACAGAAGCGTCGCTATGAACTCGGCGATCAGAGCTCTGTAGAACGACCACTTTCTCAGCTCCTCCGCGTCG