Detailed information on CNT30586754


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A6M3QG69|PIP27_MUSAC, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671777Musa acuminataSetaria viridis86.387.9283.26233forward
CNT30520589Musa acuminataSetaria italica33.333.994.4490forward
CNT30531266Musa acuminataEucalyptus grandis24.0715.3789.2365forward
CNT30375565Musa acuminataArabidopsis thaliana20.7422.6789.2956forward
CNT3070603Musa acuminataQuercus suber27.0419.2189.0473forward
CNT30385683Musa acuminataTriticum turgidum30.7437.3995.1883forward
CNT30568278Musa acuminataActinidia chinensis34.0718.6688.0492forward
CNT30552571Musa acuminataOryza glaberrima31.1133.292.8684forward
CNT30436090Musa acuminataAegilops tauschii34.078.8494.5792forward
CNT30254684Musa acuminataAvena sativa34.0740.8991.392forward
CNT30657898Musa acuminataTriticum dicoccoides36.313.4193.8898forward
CNT3079298Musa acuminataBrassica juncea22.2214.129060forward
CNT3013604Musa acuminataZea mays34.446.7993.5593forward
CNT30653715Musa acuminataRosa chinensis32.9615.2787.6489forward
CNT30213185Musa acuminataHelianthus annuus31.1115.1984.5284forward
CNT30681461Musa acuminataTriticum urartu36.323.1793.8898forward
CNT30346584Musa acuminataEragrostis tef38.8913.0885.71105forward
CNT30477240Musa acuminataArabidopsis halleri23.711.1189.0664forward
CNT30370019Musa acuminataOryza glumipatula25.9313.7891.4370forward
CNT30320106Musa acuminataAsparagus officinalis34.445.2184.9593forward
CNT30120547Musa acuminataCitrus clementina27.4129.1386.4974forward
CNT30101140Musa acuminataOryza rufipogon35.5636.6491.6796forward
CNT3039904Musa acuminataMarchantia polymorpha35.565.787.596forward

Expression of CNT30586754

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VSSFWYVRGRASRERCAWGRWQRRRCRRGRRCR*

>peptide 2 (55 aa)
MISAPRALYWCFMIPFTIPTPTMAPKHCATMYSNARISDTFRAKNSPSVTAGLMCP

>peptide 3 (89 aa)
ACRLFGTYGDVRVASAALGVGGREDGVDEDEGADDLGPEGVILVLHDPLHDPHPDDGSQALRHHVQQRPYQRHLPRQEQPERDRGVDVPS

Sequence

>CNT30586754
GCGTGTCGTCTTTTTGGTACGTACGGGGACGTGCGAGTCGCGAGCGCTGCGCTTGGGGTCGGTGGCAGAGAAGACGGTGTAGACGAGGACGAAGGTGCCG
ATGATCTCGGCCCCGAGGGCGTTATACTGGTGCTTCATGATCCCCTTCACGATCCCCACCCCGACGATGGCTCCCAAGCACTGCGCCACCATGTACAGCA
ACGCCCGTATCAGCGACACCTTCCGCGCCAAGAACAGCCCGAGCGTGACCGCGGGGTTGATGTGCCCTCC