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Detailed information on CNT30437070


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XUA6|PIP23_ORYSJ, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Aegilops tauschiiSetaria viridis32.5928.6591.93161forward
CNT30520501Aegilops tauschiiSetaria italica49.1910.1187.24243forward
CNT30535437Aegilops tauschiiEucalyptus grandis29.7641.1885.03147forward
CNT30712585Aegilops tauschiiGlycine max10.5322.2288.4652forward
CNT30190473Aegilops tauschiiSecale cereale61.134090.73302forward
CNT30289867Aegilops tauschiiTriticum aestivum66.871.7493.64330forward
CNT30221219Aegilops tauschiiHordeum vulgare38.0628.2398.4188forward
CNT30387873Aegilops tauschiiTriticum turgidum60.7359.0693300forward
CNT30139319Aegilops tauschiiLolium perenne61.7426.0790.16305forward
CNT30202937Aegilops tauschiiHelianthus annuus26.7232.0481.06132forward
CNT30681057Aegilops tauschiiTriticum urartu6732.4896.37331forward
CNT30346584Aegilops tauschiiEragrostis tef50.431.0185.14249forward
CNT30362596Aegilops tauschiiSorghum bicolor39.4732.9985.13195forward
CNT30355344Aegilops tauschiiLactuca sativa15.3825.4285.5376forward
CNT30318651Aegilops tauschiiAsparagus officinalis30.9745.1381.7153forward
CNT30102464Aegilops tauschiiOryza rufipogon37.257.2486.96184forward
CNT30116009Aegilops tauschiiOryza nivara45.9527.8987.67227forward

Expression of CNT30437070

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPPNAQAMPRMPTPLQAASAALGPAGSAWCLYPMTVATVM*

>peptide 2 (55 aa)
GSHGRCAWGRWRRRRCRRARRSCRRTPRRCPGCRRRCRPRRRRWGRRGPPGACTR*

>peptide 3 (34 aa)
MSLAIAASSADRQARVGVCGGARGASALKLCVVV*

>peptide 4 (79 aa)
VGVTGAALGVGGGEDGVDEHEDHAAERPGDAQDADAAAGRVGGVGAGGVRLVLVPDDGGHGDVEEEQRGHELGDDRAVE*

Sequence

>CNT30437070
GTGGGAGTCACGGGCGCTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGATCATGCCGCCGAACGCCCAGGCGATGCCCAGGATG
CCGACGCCGCTGCAGGCCGCGTCGGCGGCGTTGGGGCCGGCGGGGTCCGCCTGGTGCTTGTACCCGATGACGGTGGCCACGGTGATGTAGAGGAAGAGCA
GCGTGGCCACGAACTCGGCGATGACCGCGCGGTAGAGTGACCACTTGGTCAGCTCCTCGGCGTCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTT
GGCCGCGTACCCCCCGCCGGGTGGAGCCGCCTCGATGTCCTTGGCCATCGCCGCCTCCTCAGCCGATCGACAAGCTAGGGTGGGTGTGTGTGGTGGTGCC
CGAGGTGCGAGTGCGCTGAAGCTCTGTGTGGTGGTGTGAGACGACGAGGGCACGGGCTGGTATTTATGGCGGCGAGGCGCCGGGCGGCTACTGG