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Detailed information on CNT30695037


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8GRT8|PIP24_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671184Oryza sativaSetaria viridis26.1135.5988200forward
CNT30520523Oryza sativaSetaria italica54.1817.486.51415forward
CNT30531266Oryza sativaEucalyptus grandis26.547.9983.25203forward
CNT30546615Oryza sativaIpomoea triloba12.1434.5786.0293forward
CNT30180948Oryza sativaSecale cereale53.7920.186.65412forward
CNT30289867Oryza sativaTriticum aestivum37.0861.7486.62284forward
CNT30221219Oryza sativaHordeum vulgare17.8920.5784.67137forward
CNT30569510Oryza sativaActinidia chinensis8.0929.8196.7762forward
CNT30592144Oryza sativaMusa acuminata26.7689.1385.37205forward
CNT30552571Oryza sativaOryza glaberrima26.580.2491.13203forward
CNT30436090Oryza sativaAegilops tauschii65.6748.3282.9503forward
CNT30254684Oryza sativaAvena sativa24.9384.8989.01191forward
CNT30612661Oryza sativaArabis alpina8.0921.4587.162forward
CNT30450547Oryza sativaSaccharum spontaneum8.7521.5486.5767forward
CNT30139319Oryza sativaLolium perenne30.9420.2686.92237forward
CNT3012516Oryza sativaZea mays27.4215.1388.57210forward
CNT30218729Oryza sativaKalanchoe fedtschenkoi10.8428.6284.3483forward
CNT30681057Oryza sativaTriticum urartu72.4554.4787.21555forward
CNT30346584Oryza sativaEragrostis tef72.3268.9987.91554forward
CNT30362596Oryza sativaSorghum bicolor30.0338.9288.26230forward
CNT30355344Oryza sativaLactuca sativa8.2221.0787.363forward
CNT30120547Oryza sativaCitrus clementina11.2333.8684.8886forward
CNT30148622Oryza sativaBrachypodium distachyon26.6383.6187.25204forward
CNT30102464Oryza sativaOryza rufipogon51.5715.5589.87395forward
CNT30116009Oryza sativaOryza nivara25.5924.0890.31196forward
CNT30604398Oryza sativaOryza punctata73.6323.8689.72564forward

Expression of CNT30695037

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MPVPVIGIVARCTMNTANPIGSGANTGTCESRALRLGSVAEKTVYTSTKVPMISAARPVPVE*

>peptide 2 (71 aa)
GTEDDLVVQRRDRRADERPNPEDPLRLVVVVDHGDAEAPGRVDAGAGDRDRRQVHHEHREPDWQRSQHRNM*

>peptide 3 (41 aa)
MAPRHCAAMYRRARTRDTFRARKRPSVTAGLMCPPETPAVQ*

>peptide 4 (42 aa)
MKIMPPNAHAMPRTPTPPHAASAPFTAASVWCLYPITVATVT*

>peptide 5 (30 aa)
ARRMTWWYSAAIAAPMNGPTQKIHCALLLL*

Sequence

>CNT30695037
GGCACGGAGGATGACCTGGTGGTACAGCGCCGCGATCGCCGCGCCGATGAACGGCCCAACCCAGAAGATCCACTGCGCCTTGTTGTTGTTGTAGACCACG
GCGACGCCGAGGCTCCTGGCCGGGTTGATGCCGGTGCCGGTGATCGGGATCGTCGCCAGGTGCACCATGAACACCGCGAACCCGATTGGCAGCGGAGCCA
ACACCGGAACATGTGAGTCGCGGGCGTTGCGCTTGGGATCGGTGGCGGAGAAGACGGTGTACACGAGCACGAAGGTGCCGATGATCTCGGCGGCGAGGCC
GGTGCCGGTGGAGTAGCCGGCGGCGAGCTCGTTGGCGCCGCCGCCGTACCTGTCGTAGAGCGAGCTCTGGAACCCCTTGACGAGCGCGACGCCGCAGATG
GCGCCGAGGCACTGCGCCGCCATGTACAGGAGGGCGCGCACCAGGGACACCTTCCGCGCCAGGAAGAGGCCGAGTGTCACCGCCGGGTTGATGTGCCCGC
CGGAGACGCCGGCGGTGCAGTAGACGAGGATGAAGATCATGCCGCCGAACGCCCACGCGATGCCGAGGACGCCCACACCGCCGCACGCCGCGTCGGCGCC
GTTCACGGCGGCGTCCGTCTGGTGCTTGTACCCGATCACCGTGGCCACCGTGACGTAGAGGAAGAGCAGCGTGGCGACGAACTCGGCGATCAGCGCGCGG
TACAGCGACCACTTGCCCAGCTCGTCGACGTCGACGAGCGGCGCCGGCGGCGGGTCGATGTAGTCC