Detailed information on CNT30116009


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K215|PIP22_ORYSJ, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Oryza nivaraOryza sativa24.0825.5990.31196forward
CNT30520589Oryza nivaraSetaria italica54.6719.3182.47445forward
CNT30546615Oryza nivaraIpomoea triloba11.0633.4685.5690forward
CNT30375565Oryza nivaraArabidopsis thaliana6.8822.6787.556forward
CNT30190473Oryza nivaraSecale cereale29.2431.5288.24238forward
CNT30289867Oryza nivaraTriticum aestivum27.2748.2686.04222forward
CNT30387873Oryza nivaraTriticum turgidum48.6577.9588.38396forward
CNT30564990Oryza nivaraActinidia chinensis14.1327.1984.35115forward
CNT30592144Oryza nivaraMusa acuminata18.9266.9687.66154forward
CNT30552571Oryza nivaraOryza glaberrima24.8279.8499.5202forward
CNT30437070Oryza nivaraAegilops tauschii27.8945.9587.67227forward
CNT30254684Oryza nivaraAvena sativa24.9490.2292.61203forward
CNT30612661Oryza nivaraArabis alpina9.5826.9985.978forward
CNT30139319Oryza nivaraLolium perenne33.2923.1690.41271forward
CNT30227632Oryza nivaraAnanas comosus23.3428.1987.89190forward
CNT30681057Oryza nivaraTriticum urartu26.292189.72214forward
CNT30346584Oryza nivaraEragrostis tef25.5525.985.1208forward
CNT30604398Oryza nivaraOryza punctata24.088.2988.78196forward

Expression of CNT30116009

Peptides detected in this lncRNA

>peptide 1 (67 aa)
VRSSYAKLANHIQQLPQVSTLYQSISSPAIWSLESTLKYGVAINGQEVCSSGWLALISRSISLSLIQ*

>peptide 2 (44 aa)
MRQCASMQREARTRIINSPGCGSRGRCAWGRWRRRRCRRARRCR*

>peptide 3 (67 aa)
MPRMPTPLQAASVVLTVASDWCLYPITVATVMYRKRSVAMNSAITARYSDHLVSSSTSISGAGGGSV*

>peptide 4 (56 aa)
TFFLCKASKPYSTASSSLNTVSIDIQPCHLVTRINSKVRSSYQRSGSVQQWLASVN*

Sequence

>CNT30116009
GTACGTTCTTCCTATGCAAAGCTAGCAAACCATATTCAACAGCTTCCTCAAGTCTCAACACTGTATCAATCGATATCCAGCCCTGCCATTTGGTCACTAG
AATCAACTCTAAAGTACGGAGTAGCTATCAACGGTCAGGAAGTGTGCAGCAGTGGTTGGCTAGCGTTAATTAGTAGGAGTATCAGTTTAAGCCTTATTCA
GTAACACTAGCGTATACTACTATGTACAGTGCATGCGTCAGTGTGCAAGTATGCAGCGTGAGGCGCGCACACGTATAATTAACTCACCGGGATGTGGGAG
TCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGCACGAAGGTGCCGATGATCTCCGCGCCGAGGCCGGTGCCCTTGGAGTAGC
CGTCGCTGAGCTCGTTGGCTCCGCCGCCGTACCGCGCGTAGTACGAGCTCTGGAACCCCTTGACGAGCCCCACGCCACAGATGGCGCCCAGGCGATGCCG
AGGATGCCGACGCCGCTGCAGGCGGCGTCGGTGGTGTTGACGGTGGCGTCCGACTGGTGCTTGTACCCGATCACGGTGGCCACCGTGATGTACAGGAAGA
GGAGCGTCGCGATGAACTCCGCGATCACCGCGCGGTACAGCGACCACTTGGTCAGCTCCTCCACGTCGATCAGCGGCGCCGGCGGCGGGTCGGTGTAGTC
CTTCGCCGAGAACTCGCCGCCCTCCGGCGCCGACGCCTCAATGTCTTTCGCCATTGAGCTAGCTAGAATGCTAAGAACAACTAACCAAGCTAACGCTAGC
TCTGTGCAGCTTGC