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Detailed information on CNT30375565


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520589Arabidopsis thalianaSetaria italica34.413.6984.7185forward
CNT30546615Arabidopsis thalianaIpomoea triloba23.8921.9388.1459forward
CNT3020673Arabidopsis thalianaCitrullus lanatus25.515.9392.0663forward
CNT30728378Arabidopsis thalianaCorchorus capsularis32.396.3687.580forward
CNT3070603Arabidopsis thalianaQuercus suber22.6714.7489.2956forward
CNT30632211Arabidopsis thalianaVigna unguiculata21.4617.4392.4553forward
CNT30710681Arabidopsis thalianaGlycine max21.467.3294.3453forward
CNT3044723Arabidopsis thalianaPrunus dulcis31.178.4390.9177forward
CNT30180948Arabidopsis thalianaSecale cereale25.13.0287.162forward
CNT30297784Arabidopsis thalianaTriticum aestivum21.466.0588.6853forward
CNT30221219Arabidopsis thalianaHordeum vulgare26.329.7686.1565forward
CNT30385683Arabidopsis thalianaTriticum turgidum25.127.9387.162forward
CNT30564990Arabidopsis thalianaActinidia chinensis27.5316.0886.7668forward
CNT30586754Arabidopsis thalianaMusa acuminata22.6720.7489.2956forward
CNT30552571Arabidopsis thalianaOryza glaberrima22.6722.1387.556forward
CNT30435838Arabidopsis thalianaAegilops tauschii33.633.3383.1383forward
CNT30254684Arabidopsis thalianaAvena sativa22.6724.8987.556forward
CNT30657898Arabidopsis thalianaTriticum dicoccoides26.328.8986.1565forward
CNT3013604Arabidopsis thalianaZea mays34.416.283.5385forward
CNT30653715Arabidopsis thalianaRosa chinensis22.679.6187.556forward
CNT30213185Arabidopsis thalianaHelianthus annuus20.249.049050forward
CNT30681057Arabidopsis thalianaTriticum urartu34.828.4484.8886forward
CNT30346584Arabidopsis thalianaEragrostis tef27.138.3488.0667forward
CNT30355349Arabidopsis thalianaLactuca sativa61.1325.1781.46151forward
CNT30704435Arabidopsis thalianaPrunus avium29.9611.290.5474forward
CNT30120512Arabidopsis thalianaCitrus clementina33.627.7685.5483forward
CNT3038976Arabidopsis thalianaCucumis melo29.9610.8387.8474forward
CNT30102464Arabidopsis thalianaOryza rufipogon25.12.4487.162forward
CNT30116009Arabidopsis thalianaOryza nivara22.676.8887.556forward
CNT30112149Arabidopsis thalianaFicus carica24.77.7788.5261forward
CNT3050399Arabidopsis thalianaCucumis sativus34.019.286.984forward

Expression of CNT30375565

Peptides detected in this lncRNA

>peptide 1 (30 aa)
RNVGVSGTTFGVSGREDGVDKNESTNDLCG*

Sequence

>CNT30375565
CCGGAACGTGGGAGTCTCTGGCACTACGTTTGGGGTCAGTGGCAGAGAAGACGGTGTAGACAAGAACGAAAGTACCAATGATCTCTGCGGCTAGACCGTT
GGCTCCACCTCCGTAACGGGTGTAGTAAGAGCTTTGGAAGGCTTTGACAAAACCAACTCCACAAATCGCACCCAAACACTGAGCGATTATGTACAATAGG
GCCCTAGGTAACGACACTTTACGTGCCAAGAATAGCCCAAATGTCAC