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Detailed information on CNT30604398


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H5N9|PIP21_ORYSJ, E-value = 4e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Oryza punctataOryza sativa23.8673.6389.72564forward
CNT30671184Oryza punctataSetaria viridis9.7340.9388.7230forward
CNT30520523Oryza punctataSetaria italica22.2922.189.75527forward
CNT30639531Oryza punctataNymphaea colorata3.7620.4683.1589forward
CNT30531266Oryza punctataEucalyptus grandis11.1762.4179.17264forward
CNT30546615Oryza punctataIpomoea triloba4.0635.6984.3896forward
CNT3097560Oryza punctataSolanum tuberosum5.6721.4484.33134forward
CNT30180948Oryza punctataSecale cereale19.3722.3490.17458forward
CNT30289867Oryza punctataTriticum aestivum13.3268.4886.03315forward
CNT30221191Oryza punctataHordeum vulgare4.5750.9487.96108forward
CNT30387873Oryza punctataTriticum turgidum7.7436.0287.43183forward
CNT30569510Oryza punctataActinidia chinensis3.4739.4290.2482forward
CNT30592144Oryza punctataMusa acuminata8.0883.0483.25191forward
CNT3085023Oryza punctataVigna radiata7.737.680.77182forward
CNT30552571Oryza punctataOryza glaberrima8.9783.7989.15212forward
CNT30436090Oryza punctataAegilops tauschii16.1636.782.46382forward
CNT30254684Oryza punctataAvena sativa8.7191.5688.83206forward
CNT30657898Oryza punctataTriticum dicoccoides20.666.6281.31487forward
CNT30612661Oryza punctataArabis alpina2.7522.4987.6965forward
CNT30450547Oryza punctataSaccharum spontaneum3.7228.385.2388forward
CNT30139319Oryza punctataLolium perenne11.1722.5682.95264forward
CNT30227661Oryza punctataAnanas comosus4.8650.4481.74115forward
CNT30214941Oryza punctataHelianthus annuus327.8485.9271forward
CNT30681057Oryza punctataTriticum urartu24.757.3186.3584forward
CNT30346584Oryza punctataEragrostis tef23.9470.4986.75566forward
CNT30362596Oryza punctataSorghum bicolor14.4757.8790.94342forward
CNT30596194Oryza punctataOryza meridionalis6.2634.0285.14148forward
CNT30355344Oryza punctataLactuca sativa2.6621.0788.8963forward
CNT30370019Oryza punctataOryza glumipatula6.2629.1385.81148forward
CNT30109688Oryza punctataOryza longistaminata6.2627.9285.81148forward
CNT30148068Oryza punctataBrachypodium distachyon9.313888.64220forward
CNT30102682Oryza punctataOryza rufipogon14.9777.6396.89354forward
CNT30576241Oryza punctataOryza barthii6.2622.3285.81148forward
CNT30116009Oryza punctataOryza nivara8.2924.0888.78196forward
CNT30176173Oryza punctataVigna angularis2.6220.3387.162forward
CNT30113851Oryza punctataFicus carica3.8132.4987.7890forward

Expression of CNT30604398

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVAFGLGLVRISPPINTKSPGAYFDKMCAKSAKADKHPNASSRLVTSTQREERKTLMPRCPPYSQPQMFTTI*

>peptide 2 (66 aa)
VVPRLLVVEDDGRSDAPRRVDAGAGDRDRRKVDHEHGEADWQGRQDLVRDTHTRPQISPDLQELGE*

>peptide 3 (30 aa)
MARTRDTLRARKSPNVTAGLMWPPEIPAVQ*

>peptide 4 (32 aa)
MKHNTTQLIKLCFCQTKPHPCLTCVGCLFSAT*

>peptide 5 (35 aa)
MLLFLVRTRNSFGKNRGKGEEFILAVLAKFIMEIT*

>peptide 6 (37 aa)
MVINISGLLGSKLVAKKPTQAFLSRNAPFNKELERTS*

>peptide 7 (38 aa)
MLVVRLKHLPSLKLQLSKHNFQREEKKNWESSDAYRDM*

>peptide 8 (38 aa)
MFNGHQHQWTIREQVSGQKAHTSLLVTKCPFQQGTGTN*

>peptide 9 (39 aa)
MLTGTCESRALRLGSVAEKTVYTSTKVPMISAARPVPLE*

>peptide 10 (39 aa)
MPLSTRNWNELARAPNGCFWPWLSAHFTPHKHQVTRGIF*

>peptide 11 (47 aa)
LCHAFSLLKMTAAPMLLAGLMPVPVIGIVARWTMNTAKPIGRGAKTW*

>peptide 12 (42 aa)
MKIMPPNAHAMPSTPTPPHAASAPDADVSVWCLYPMTVATVM*

Sequence

>CNT30604398
GGTTGTGCCACGCCTTCTCGTTGTTGAAGATGACGGCCGCTCCGATGCTCCTCGCCGGGTTGATGCCGGTGCCGGTGATCGGGATCGTCGCAAGGTGGAC
CATGAACACGGCGAAGCCGATTGGCAGGGGCGCCAAGACCTGGTGAGAGACACACACACAAGACCACAAATTAGCCCGGATTTGCAAGAGTTAGGCGAGT
GACCAAAACTATAACTATTCAGCAACAAAGGAACTGTCGTTTTAACAGTGATGAAGCACAATACAACACAACTCATAAAACTGTGCTTCTGCCAAACCAA
ACCACACCCCTGCTTGACATGTGTAGGGTGTCTCTTTTCAGCCACATGACCCATGTTTAATGGTCATCAACATCAGTGGACTATTAGGGAGCAAGTTAGT
GGCCAAAAAGCCCACACAAGCCTTCTTGTCACGAAATGCCCCTTTCAACAAGGAACTGGAACGAACTAGCTAGAGCACCAAATGGTTGCTTTTGGCCTTG
GCTTAGTGCGCATTTCACCCCCCATAAACACCAAGTCACCAGGGGCATATTTTGACAAGATGTGTGCAAAATCTGCAAAAGCAGATAAGCACCCAAACGC
TTCTTCACGCCTTGTCACCTCCACCCAAAGGGAAGAAAGAAAGACTCTCATGCCAAGATGCCCACCTTATTCACAACCTCAAATGTTCACCACCATATAA
AGTGACCTATCCATTTCCATTCTCCAAGAAAAAAAAAAGAAACTACTCTACAATTTCACCTAACAATATGCTCTTGTTTTTAGTGAGGACACGAAATAGT
TTTGGAAAAAACAGAGGGAAGGGTGAAGAATTTATACTGGCGGTCCTTGCAAAATTCATCATGGAGATCACATGAAAACCGGCCCGGGTACCGGGTACAC
CTAGCCGCTGCCGCTGCAGCCTGCACGAACCAGCTCACCCGGTCTGGACCATGCAGTACACCGGACCAGCTCAGCCTTTTTGGCTTTGCTAGGGCCACAT
GTAGTACGCGCCCGCACAGCCGTGCTACCGTGATGGGATGGAACAGTGATAGCAGCAGACGTGACAAATGAAATACAGTAAATAAGTTAATAGAGTATTT
TTAATCCTCTATGTCCTTCTTCCGTGTGTACTAGGCTCATCTTGAATCTTCTACTACCCAAAAAAAAACTACTTTCAATTATGTGGTGGGCTATCTATTG
CTAGTGCTACTGTACTGGAGTGATACGGAGTAGAACGTTAAGAGCAAATTCAACACTACGGGATGCTTAATAATATGCTCTTGTAGTACTATCTGGAAGA
GATCTGAAAATTGACAATCTAGGCATGAAAGTAGCAATATAACTATAATTTTGGATTTTTTTCTTCCGAAAAGAATCAAGAGTTTTTCAAAGAAATTATT
GCTTCTGTTCAATATGCGCTTGCTTTTTTTTTAATCAAAGAGGATATAGGATATTCTTCCACTGCTTTTCATTCCTTTTTGTTCACATCTGTCATTCTTC
CGATCTATACAAACTAATATTCTCATACTAACACATGCATGTTAGTTGTTAGATTAAAGCATCTACCATCACTTAAGCTCCAATTAAGCAAGCACAATTT
TCAAAGAGAAGAAAAGAAAAATTGGGAGAGCTCCGATGCTTACCGGGACATGTGAGTCGCGGGCGTTGCGCTTAGGGTCGGTGGCGGAGAAGACGGTGTA
CACGAGCACGAAGGTGCCGATGATCTCGGCGGCGAGGCCGGTGCCCTTGGAGTAGCCGGCGGAGAGCGTGTTGGCGCCGCCGCCGTACCTGTTGAAGTAG
GCGCTCTGGAACGCCTTGACGAGGCCGACGCCGCAGATGGCGCCGAGGCACTGCGCCACGATGTAGAGGATGGCGCGGACCAGGGACACCTTGCGCGCCA
GGAAGAGCCCGAACGTCACCGCCGGGTTGATGTGGCCGCCGGAGATTCCGGCGGTGCAGTAGACGAGGATGAAGATCATGCCACCGAACGCCCACGCGAT
GCCGAGCACGCCCACGCCGCCGCACGCCGCGTCGGCGCCGGACGCGGACGTGTCCGTCTGGTGCTTGTACCCGATGACGGTGGCCACGGTGATGTAGAGG
AAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGTACAGCGACCACGAGCCTAGCTCCGCCGCGTCGATCAGCGGCGCCGGTGGCGGGTCCGTGT
AGTCCTTGGCAGCGAACTCGCCGGCGGCGCCGCCGCTCTCCATCACCTCGTCCTTCCCCATGCCCAACCTAGCTTAGCTAGCTAGCTTGCTCTCGCCGCC
GCGGGAAGCTTAACGGGAGGAGTGACACGACCAACCTTGCAAGCAATGGTGGAGCTGAGCTGAG