« Back to Ananas comosus search


Detailed information on CNT30228928


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A6M3QG69|PIP27_MUSAC, E-value = 3e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Ananas comosusOryza sativa26.9216.4892.38105forward
CNT30520501Ananas comosusSetaria italica26.924.3794.29105forward
CNT30289517Ananas comosusTriticum aestivum39.4927.8586.36154forward
CNT30221219Ananas comosusHordeum vulgare24.3614.2692.6395forward
CNT30387764Ananas comosusTriticum turgidum39.4917.3686.36154forward
CNT30553402Ananas comosusOryza glaberrima26.9220.0892.38105forward
CNT30436608Ananas comosusAegilops tauschii50.7727.5487.88198forward
CNT30254684Ananas comosusAvena sativa15.6427.1193.4461forward
CNT30657898Ananas comosusTriticum dicoccoides39.4921.0786.36154forward
CNT30214941Ananas comosusHelianthus annuus14.121.5789.0955forward
CNT30346584Ananas comosusEragrostis tef22.5610.9684.0988forward
CNT30366377Ananas comosusSorghum bicolor21.7917.190.5985forward
CNT30596194Ananas comosusOryza meridionalis26.9224.1492.38105forward
CNT30370054Ananas comosusOryza glumipatula26.9220.0892.38105forward
CNT30109688Ananas comosusOryza longistaminata26.9219.8192.38105forward
CNT30151223Ananas comosusBrachypodium distachyon44.144.4481.4172forward
CNT30101372Ananas comosusOryza rufipogon26.9213.9392.38105forward
CNT30576241Ananas comosusOryza barthii26.9215.8492.38105forward
CNT30116534Ananas comosusOryza nivara26.9224.3192.38105forward
CNT30113851Ananas comosusFicus carica14.3620.2296.4356forward

Expression of CNT30228928

Peptides detected in this lncRNA

>peptide 1 (60 aa)
NLSAARDGIRGRRSRGRCAWGRWRRRRCRRGRRSCRRRPRRRRGSRRPCRGSTATATCSR*

>peptide 2 (38 aa)
MFDQQLCGRRVGIRRLLRLLARHYLLLLSRHGCCGGLVL

Sequence

>CNT30228928
CGAATCTAAGTGCGGCAAGGGACGGCATACGGGGACGAAGGAGTCGCGGGCGGTGCGCTTGGGGTCGGTGGCGGCGAAGACGGTGTAGACGAGGACGAAG
ATCATGCCGCCGAAGGCCCAGGCGACGCCGAGGAAGCCGACGCCCGTGCAGGGGCTCGACTGCGACTGCGACTTGTAGCCGATGACGGTGGCGATGGCGA
CATAGACGAAGAGGAGGGTGGCGACGAACTCCGCGATCGCCGCACGGTACAGCGACCACCGCCGGAGCTCGCCATGTTCGACCAGCAGCTCTGCGGGCGG
CGGGTCGGCATAAGGCGCCTTCTTCGCCTTCTCGCTCGCCATTATCTCCTCCTCCTTAGTCGACATGGTTGCTGTGGTGGGCTTGTGTTG