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Detailed information on CNT30671184


BLAST search results

BLAST vs Swiss-Prot:
sp|Q06611|PIP12_ARATH, E-value = 1e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695037Setaria viridisOryza sativa35.5926.1188200forward
CNT30180948Setaria viridisSecale cereale41.111.2787.45231forward
CNT30289867Setaria viridisTriticum aestivum27.7633.9191.67156forward
CNT30221631Setaria viridisHordeum vulgare20.648.3292.24116forward
CNT30387873Setaria viridisTriticum turgidum26.6929.5392150forward
CNT30554969Setaria viridisOryza glaberrima25.817.0680.69145forward
CNT30437070Setaria viridisAegilops tauschii28.6532.5991.93161forward
CNT30139319Setaria viridisLolium perenne32.0315.3888.89180forward
CNT30227632Setaria viridisAnanas comosus27.582387.1155forward
CNT30681057Setaria viridisTriticum urartu39.3221.6988.69221forward
CNT30346584Setaria viridisEragrostis tef28.2919.893.71159forward
CNT30362596Setaria viridisSorghum bicolor40.5738.5886.84228forward
CNT30318651Setaria viridisAsparagus officinalis26.6944.2580.67150forward
CNT30102464Setaria viridisOryza rufipogon33.997.5289.01191forward
CNT30115855Setaria viridisOryza nivara37.1958.7190.91209forward
CNT30604398Setaria viridisOryza punctata40.939.7388.7230forward

Expression of CNT30671184

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MTRLLRETEIVAADPDRNRAMPRMPTPPHAASGPDAAASVWCLYPMTVATVM*

>peptide 2 (53 aa)
NKTSHNSFPNSPYGIHTYRKQRYITLLFEEKQRQADVAADSGTHRNTARSPRA*

Sequence

>CNT30671184
TAAATAAAACCTCACATAACTCGTTTCCAAATTCTCCATACGGAATACATACATACAGGAAGCAAAGATATATCACACTTCTTTTCGAAGAAAAACAGCG
GCAAGCGGACGTGGCGGCGGACTCCGGGACACATCGAAACACGGCGCGGAGCCCGCGTGCATGACACGATTACTACGAGAGACGGAGATTGTGGCAGCAG
ATCCTGATCGGAACAGGGCGATGCCGAGGATGCCCACGCCGCCGCACGCCGCGTCGGGGCCCGACGCCGCCGCGTCCGTCTGGTGCTTGTACCCGATGAC
CGTGGCCACGGTGATGTAGAGGAAGAGCAGCGTCGCCACGAACTCGGCGATCGCCGCGCGGTACAGCGACCACTTGGTCAGCTCCTCCGCGTCGATCAGC
GGCGCCGGCGGAGGGTCCGAGTAGTCCTTAGCCGAGAACTCGCCGGCCTCGGGCCCCGACGCCTCGATGTCTTTCGCCATGCCGATCAGTACCTTAGCTT
GCTCAGCTCAGGGCTCAGGCTATGAGCGCGCTTGCTTTGTGCACAGCTAGCTAGAGTGGTGT