Detailed information on CNT30557569


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 6e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311401Panicum halliiCamelina sativa25.5833.5981.13265forward
CNT30350304Panicum halliiEragrostis tef31.3741.1492325forward
CNT30583045Panicum halliiEchinochloa crusgalli49.7166.6291.07515forward

Expression of CNT30557569

Peptides detected in this lncRNA

>peptide 1 (39 aa)
YDVVAHHIYNINTRVDRNCTFDLPSCAIQFLVSINRMNY*

>peptide 2 (41 aa)
MPVHVRAIEVGEGLLGREPQLPVGALLQEKQDSVHYPFTDQ*

>peptide 3 (37 aa)
YMTSWLTIYTTLTLESIGIVHLIYHHAQYSFWSQLTG*

>peptide 4 (60 aa)
MASMASLPFLISLSLSSFISFSVLPKPRKYCLPMEPGLYQSWRRRCSAKPMSAMLKTKSV*

>peptide 5 (42 aa)
MTPVLNHGSAVSAGMMPSLPKISGAMAPAAPSMAKRPLITSP*

>peptide 6 (48 aa)
MKPPSPGSLRRHAASSFRSDQRFRMHQSSSILIQELARSCRYTYVPSR*

Sequence

>CNT30557569
TATATGACGTCGTGGCTCACCATATATACAACATTAACACTAGAGTCGATCGGAATTGTACATTTGATTTACCATCATGCGCAATACAGTTTCTGGTCTC
AATTAACAGGATGAATTACTAATTTGTTACAAGCAGCGAGCAGCATATGAACACACATCGATCGATCACCTCTCGCCTCCCACTACAACAACAGGCGGCG
GCACACCCGTGATGCACCGCACGGTCTAGTGGAACTTGAGGCTGGTGAGCACGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGG
TCCGACACCGGTGACGAGCCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCC
TTCTCGGTCTTGCCGAAGCCGAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCA
TGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTTGTAGGTGCCCGCGGGAGGGATGACCCCCGTCTTGAACCACGGCAGCGCGGTCTCCGCCGG
GATGATGCCCAGCTTGCCGAAGATCTCCGGGGCGATGGCGCCCGCCGCGCCCAGCATGGCGAAGCGGCCGTTGATCACCTCGCCGTAGGCCAGCCACTTG
GGCTCGATGAAGCCGCCGTCGCCGGGCAGCCTGCGGCGGCACGCAGCATCCAGTTTCAGATCGGATCAGAGATTCAGAATGCATCAGTCATCATCGATAT
TAATTCAAGAGCTAGCTCGATCATGCCGGTACACGTACGTGCCATCGAGGTAGGAGAGGGACTGCTTGGACGCGAACCACAGCTGCCTGTCGGCGCCTTG
CTGCAAGAGAAACAAGATTCAGTTCATTATCCATTCACGGATCAGTAGCTCGCCGTAGAGACGACGATGAGATCGAGGATCGGAGCTAGGGACCTTGGCC
GGCGGGCTGGAGCTGGCCCTGACGACGAAGGGCGCC