Detailed information on CNT30673553


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30586817Setaria viridisMusa acuminata55.3723.2585.78232forward
CNT30234205Setaria viridisBrassica oleracea55.1344.5185.71231forward
CNT3073928Setaria viridisBrassica juncea55.1352.7487.01231forward
CNT3011614Setaria viridisZea mays81.6245.5491.52342forward
CNT30367843Setaria viridisSorghum bicolor82.8248.8790.2347forward
CNT30335796Setaria viridisCynara cardunculus54.6557.5485.59229forward

Expression of CNT30673553

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SKGHDKLQLVILITVQFGQTYFMGTAPHLAIMTLTNSS*

>peptide 2 (71 aa)
MTWRSSAAEMKPFWSLSKTLNASLNSAICSSVSWSAMGEGCGEGTRRGRGEREREGARARVTPLIGPARMGN

Sequence

>CNT30673553
ACTCAAAGGGACATGACAAACTACAGCTTGTGATCCTGATAACAGTTCAATTTGGACAGACTTATTTCATGGGGACCGCTCCTCACTTGGCCATCATGAC
CTTGACGAACTCCTCGTAGTTGATCTGGCCGTCGCCATCCACGTCAGCCTCGCGGATCATCTCATCGACTTCCTCATCGGTCAGCTTCTCACCAAGGTTG
GTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTCTGGTCCTTGTCGAAGACGCTGAACGCCTCCTTGAACTCCGCGATCTGCTCGTCGGTGA
GCTGGTCCGCCATGGGAGAGGGCTGCGGCGAGGGCACGCGACGCGGAAGGGGGGAGAGAGAGAGAGAGGGTGCTCGCGCTCGCGTCACTCCGTTGATTGG
GCCTGCGCGGATGGGGAAC