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Detailed information on CNT30478099


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 5e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520322Arabidopsis halleriSetaria italica20.9313.1881.76148forward
CNT30375654Arabidopsis halleriArabidopsis thaliana26.7339.0597.35189forward
CNT30708158Arabidopsis halleriGlycine max21.2218.0984.67150forward
CNT30387274Arabidopsis halleriTriticum turgidum13.5821.4385.4296forward
CNT30562752Arabidopsis halleriActinidia chinensis21.6412.0984.31153forward
CNT30236263Arabidopsis halleriBrassica oleracea29.743.2188.57210forward
CNT30144899Arabidopsis halleriMedicago truncatula14.7124.3681.73104forward
CNT30262014Arabidopsis halleriBrassica rapa28.4343.7988.06201forward
CNT30360489Arabidopsis halleriLactuca sativa21.9214.2780.65155forward
CNT3031825Arabidopsis halleriTheobroma cacao21.2229.9480150forward
CNT30328621Arabidopsis halleriAsparagus officinalis15.1335.9183.18107forward
CNT30120689Arabidopsis halleriCitrus clementina21.2213.1881.33150forward
CNT3036109Arabidopsis halleriCucumis melo21.0714.3485.23149forward
CNT30581381Arabidopsis halleriEchinochloa crusgalli21.9255.7680.65155forward
CNT30496270Arabidopsis halleriDigitaria exilis20.0814.3981.69142forward

Expression of CNT30478099

Peptides detected in this lncRNA

>peptide 1 (31 aa)
GSDASPNGSKNLPPGYKRFSESSSAFRWNSM*

>peptide 2 (32 aa)
MSETTRVPMIEEAEAAVEVAAISGVVSYVAFAV

>peptide 3 (42 aa)
MAETASIWDPPPRYGSRSRLRLSSWRDTLGILRLGTIKAGLR*

>peptide 4 (45 aa)
MSKLKTQTLKKRRKRGDTLPASCQVTPVSHSTVIAPRVASIAHRP*

>peptide 5 (45 aa)
PGQMLVLTGQRTCLLDTNASLSPAQRFVGTQCSRPLTLRSISMSR*

Sequence

>CNT30478099
CCGGGTCAGATGCTAGTCCTAACGGGTCAAAGAACTTGCCTCCTGGATACAAACGCTTCTCTGAGTCCAGCTCAGCGTTTCGTTGGAACTCAATGTAGCC
GACCACTAACACTTCGATCCATATCAATGTCGAGATAGAGAACGGCAATGGCTGTCCTAAGTAAGACGATCCATCCACTAGCTCTACCTGATAAAACATA
AAAACGACAATCAGACAATGTCAAAACTCAAAACACAAACGCTAAAAAAACGACGAAAAAGAGGCGATACCTTGCCGGCGTCTTGCCAAGTAACACCGGT
GAGCCATTCTACGGTGATAGCGCCGAGAGTGGCGAGCATTGCCCACCGACCGTGAATCAGCTCACATTCTCTGAATCTCTGTAGCCCGAAGACTTCACTG
TATGGCTGAAACGGCGTCGATTTGGGATCCACCGCCTCGGTACGGGTCCCGATCACGTCTCCGGCTAAGTTCTTGGCGAGATACTCTGGGGATTTTGCGC
CTGGGAACCATAAAGGCCGGTCTGAGATAACCGTCTTAGCCTTTTTAGGAGCGGCTTTCTTAGTTCCGAATCCGAACCGGGCTGTGAACCGGGTTGAACC
GGAGCTAATGTCGGAAACCACCCGGGTACCCATGATTGAAGAAGCAGAAGCGGCGGTTGAAGTGGCAGCCATCTCCGGCGTCGTTAGTTATGTCGCGTTT
GCGGTTT